Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R10E4.4
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Query: R10E4.4 CE03558 locus:mcm-5 CDC46 status:Confirmed SW:Q21902 protein_id:CAA90765.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MCM MCM2/3/5 family 980.8 3.3e-291 1
DUF411 Protein of unknown function, DUF 4.3 8.7 1
NAM No apical meristem (NAM) protein 3.5 8.5 1
Erythro_esteras Erythromycin esterase 2.8 5.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NAM 1/1 62 71 .. 125 134 .] 3.5 8.5
Erythro_esteras 1/1 96 118 .. 398 420 .] 2.8 5.6
DUF411 1/1 327 335 .. 91 99 .] 4.3 8.7
MCM 1/1 133 673 .. 1 617 [] 980.8 3.3e-291
Alignments of top-scoring domains:
NAM: domain 1 of 1, from 62 to 71: score 3.5, E = 8.5
*->dWvMHEYRlt<-*
+++ HEYRl+
R10E4.4 62 NYFSHEYRLE 71
Erythro_esteras: domain 1 of 1, from 96 to 118: score 2.8, E = 5.6
*->leaLEvaarliAleskkpsplgk<-*
l aLE+aa+ A e ++p+p g+
R10E4.4 96 LPALEEAAKIVADEITTPRPKGE 118
DUF411: domain 1 of 1, from 327 to 335: score 4.3, E = 8.7
*->rKdaYdVva<-*
rKdaY+++a
R10E4.4 327 RKDAYELIA 335
MCM: domain 1 of 1, from 133 to 673: score 980.8, E = 3.3e-291
*->kpisiReLrashigkLVrvsGiVtraSeVrPklkkavytCpkCghtv
p+s+R++++ ++++V++sGi+++a +Vr k++k++ +C++C+ht+
R10E4.4 133 YPTSLRQVKSAQVSQVVKISGIIVAAAQVRSKATKVTLQCRQCKHTI 179
eveiqdlfinsftkptfcpsreCptcqskgdlkeNGdeCplgpfildhdk
+++ +++++ f+++r+C ++q++++++ Cp++p+i+ +dk
R10E4.4 180 PDVSIK---PGLEG--FALPRTCAAPQQGQMQR-----CPIDPYIMLPDK 219
SkfvDfQelkiQElpeevPaGqiPRsvdvillddLVdkvkPGDrVevtGI
+++vD+Q+lk+QE+pe+vP+G++PR+++++ +++L+dkv+PG+rV+++G+
R10E4.4 220 CECVDYQTLKLQENPEDVPHGEMPRHLQLFTERYLTDKVVPGNRVTIVGV 269
yrvvpdvqLgpkkrlntsgsrGvtglkslgvgglvfktyieAnhieklds
y++++ + ++++ ksl ++++ +y+++++i++ s
R10E4.4 270 YSIKKL------IQKKGGD-------KSL---QGIRTPYLRVLGIHMETS 303
eiqdnkrlggrkDlegseeeiteelllsqlsdedeeeikklakdkkdiye
++ ++++ + +t+e +e+++k la++k d ye
R10E4.4 304 GP-----------GRTNFTTFTPE---------EERMFKTLAQRK-DAYE 332
kLarSlAPsIYGhedVKKAILLlLfGGveKnlpdGtkdrlRGDINiLLvG
++a+S+APsIYG d+KK I++lLfGG +K+lpdG+ +RGDIN+LL+G
R10E4.4 333 LIAKSIAPSIYGSADIKKSIACLLFGGARKKLPDGIT--RRGDINVLLLG 380
DPGKTAKSQlLKyVeklaPRAvYTsGkGSSaVGLaTAaVvRDpeTgEDwv
DPG TAKSQlLK+Ve+++P++vYTsGkGSSa+GL TA+V+RDp+++ ++
R10E4.4 381 DPG-TAKSQLLKFVEQVSPIGVYTSGKGSSAAGL-TASVIRDPQSRS-FI 427
LEaGALVLADgGvcCIDEFDKMndsDRtaIHEAMEQQTISIAKAGItttL
+E+GA+VLADgGv+CIDEFDKM+++DR+aIHEAMEQQTISIAKAGItttL
R10E4.4 428 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTL 477
NARcSvLAAANPiyGRYDpkktpieNIdLpapLLSRFDLiFvvlDepDee
N+RcSvLAAAN +yGR+D ++ +NId+++++LSRFD+i++v+D++D
R10E4.4 478 NSRCSVLAAANSVYGRWDESRGD-DNIDFMPTILSRFDMIYIVKDTHDVL 526
kDeeLAkHvvdvHrhskP.eedgeegglvlasdadNkaeeeeieeepyek
kD LAkHv++vH+++ + +e++ +g++ k++ ++++ +++++
R10E4.4 527 KDATLAKHVIEVHVNASAaKERDIAGVP--------KTATTDSDGVMTMF 568
fDsllhgrkkekarsekleidggeidielLrkYIaYAReqikPkLseeAa
D ++g ++ie+L+k+++YAR ++ P+L+++A+
R10E4.4 569 -D------------------TDGFLTIEFLKKFVTYARLNCGPRLTPQAS 599
ekiveaYvelRkddkr.Esd.tgs.asrstipITaRqLEsiIRLsEAhAK
ek+v++Yv++R+ + +++++g++a+ s ipIT+RqLE+i+R++E++AK
R10E4.4 600 EKLVNHYVKMRNPVVNaDAFkSGKkAHNSAIPITVRQLEAIVRIAESIAK 649
lrLsdeVeeeDVeeAirLireslk<-*
++L+ ++++++VeeA+rL+r+s++
R10E4.4 650 MELQQFATDKHVEEALRLFRVSTI 673