Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R10H10.3
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Query: R10H10.3 CE06294 CUB domain, von Willebrand factor type A domain status:Confirmed TR:Q21916 protein_id:CAA94611.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CUB CUB domain 63.2 2.3e-17 1
vwa von Willebrand factor type A domain 12.8 0.0041 1
Glycos_transf_1 Glycosyl transferases group 1 5.9 2.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CUB 1/1 50 151 .. 11 116 .] 63.2 2.3e-17
Glycos_transf_1 1/1 264 329 .. 1 80 [. 5.9 2.3
vwa 1/1 278 350 .. 117 189 .] 12.8 0.0041
Alignments of top-scoring domains:
CUB: domain 1 of 1, from 50 to 151: score 63.2, E = 2.3e-17
*->sGsisSPnYPnrsdYppnkeCvWrIrappgyrvVeLtFqdFdlEdhd
+G+i SP YP+ +Yppn C++ I+a+pg+ +++F +FdlE+
R10H10.3 50 NGTINSPLYPY--NYPPNDKCYYYISAEPGKV-LKISFSHFDLES-- 91
gaCryDyvEirDGdpssspllGrfCG....sgkPedirStsnrmlikFvs
C D++ i+DG+ +s+ l + G++++ +++++++t+ + ++F s
R10H10.3 92 --C-CDFITIYDGPTVVSKKLVQIGGpgsnVTSAGTYYTTTRNAVVTFES 138
DasvskrGFkAty<-*
+++k+GF+ y
R10H10.3 139 NPTIQKSGFSMQY 151
Glycos_transf_1: domain 1 of 1, from 264 to 329: score 5.9, E = 2.3
*->dreeirkklgikedkkiilfvGRlvpeKGidllieAfkkLkkkpkll
d++e + +gi e+ ii+ ++ + ++ + e ++k++
R10H10.3 264 DSKEFDERYGI-EKVVIIFVAANANNDQDYNESFEFAHKIR------ 303
klnpnlkLvivGgpYdsedgeeedelkklaekl<-*
+++k+++vG g + d+ ++ +++
R10H10.3 304 -TEQDAKVIVVG------MGSGLDQTRLSKLAY 329
vwa: domain 1 of 1, from 278 to 350: score 12.8, E = 0.0041
*->vlillTDGksndgpdve.aaaalrrk.....giivfavGvdadeeeL
v+i++ +nd + +e+ a + +++++ ++iv++ G++ d+ L
R10H10.3 278 VIIFVAANANNDQDYNEsFEFAHKIRteqdaKVIVVGMGSGLDQTRL 324
r.iasepeseghvfyvedfddlwlqlkdlqeal<-*
++a + g++f+++++d+l+ +l++++
R10H10.3 325 SkLAYAS---GYAFFSTSYDNLS----SLIPKI 350