Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R10H10.2
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Query: R10H10.2 CE06293 locus:spe-26 MIPP repeats status:Partially_confirmed SW:Q10579 protein_id:CAA94610.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Kelch Kelch motif 158.3 1e-43 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Kelch 1/6 243 271 .. 12 39 .. 15.3 0.0098
Kelch 2/6 280 325 .. 1 45 [] 34.7 2.6e-08
Kelch 3/6 329 380 .. 1 45 [] 44.6 3.8e-11
Kelch 4/6 382 427 .. 1 45 [] 43.4 8.5e-11
Kelch 5/6 429 473 .. 1 45 [] 20.7 0.00028
Kelch 6/6 476 522 .. 1 45 [] 2.2 57
Alignments of top-scoring domains:
Kelch: domain 1 of 6, from 243 to 271: score 15.3, E = 0.0098
*->gkiYviGGydg.qslnsvevYDpetntWe<-*
+ + +iGG+ +q+ + +e +Dpe+n+W+
R10H10.2 243 DVLIIIGGWLHrQACDRIEWFDPENNCWK 271
Kelch: domain 2 of 6, from 280 to 325: score 34.7, E = 2.6e-08
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
+++g++ ++g +Y +GG++g++ + +++++et +W ++++m+
R10H10.2 280 TLAYHGSAIVDGILYLFGGSTGqRTRCETWKLSTETWQWDRCNNMM 325
-*
R10H10.2 - -
Kelch: domain 3 of 6, from 329 to 380: score 44.6, E = 3.8e-11
*->pRsgagvvvlggkiYviGGydg.......qslnsvevYDpetntWek
+ ++vv++g+iYv+GG+++++ +++ +++++ ev+Dp+tn+W++
R10H10.2 329 NYISNSSVVYDGRIYVFGGQNFreitrtaVRSRTGEVFDPKTNKWTE 375
lpsmp<-*
+s++
R10H10.2 376 TASLS 380
Kelch: domain 4 of 6, from 382 to 427: score 43.4, E = 8.5e-11
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
+Rs +++ v++++iYv GG++g+ +l svevY+p n ++ ++p
R10H10.2 382 MRSDCAAEVFENQIYVSGGFNGdMILASVEVYNPIGNVFSRTVDLP 427
-*
R10H10.2 - -
Kelch: domain 5 of 6, from 429 to 473: score 20.7, E = 0.00028
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
p +g++ +g+++ ++GG+dg ++ n++++++ + ++W++ p+
R10H10.2 429 PITGHCLLNHGNQLLIVGGFDGaERQNKIWMWHRT-GEWQQRPEKL 473
-*
R10H10.2 - -
Kelch: domain 6 of 6, from 476 to 522: score 2.2, E = 57
*->pRsgagvvvlggkiYviGGydgqslnsvevYDpe..tntWeklpsmp
Rs ++++++g ++ + Gy+ + ++e++ pe++ + +++p+ p
R10H10.2 476 GRSTSAACSYKGWLFSVAGYTEKVEATCEILLPEpnASRFSFIPDVP 522
<-*
R10H10.2 - -