Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R11.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: R11.1 CE31578 mitochondrial transporter protein status:Confirmed TR:O62347 protein_id:CAB04651.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
mito_carr Mitochondrial carrier protein 295.8 5.3e-85 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
mito_carr 1/3 6 95 .. 1 125 [] 114.1 2.6e-30
mito_carr 2/3 96 192 .. 1 125 [] 100.3 3.8e-26
mito_carr 3/3 196 288 .. 1 122 [. 82.9 2.9e-21
Alignments of top-scoring domains:
mito_carr: domain 1 of 3, from 6 to 95: score 114.1, E = 2.6e-30
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
++ + aGg AG++ ++++yPlDvvKtRLQ+ ++
R11.1 6 EGGRQITAGGSAGLVEVCLMYPLDVVKTRLQLGQQD----------- 41
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
kg++dc++k++k+EG i +g+YkG++p++
R11.1 42 --------------------KGMMDCVVKTLKNEG-I--GGFYKGILPPI 68
lrvapygaaiyFgtYEqlKklllkkkge<-*
l +p +a +F+t+Eq+K +++++ +
R11.1 69 LAETPK-RATKFFTFEQYKIAFTHSEIP 95
mito_carr: domain 2 of 3, from 96 to 192: score 100.3, E = 3.8e-26
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+++ +aG ++G++ a+v++P++vvK+RLQ+++ ss +
R11.1 96 LPVTMSFAGLFSGLTEAIVICPFEVVKVRLQADRNSSVK-------- 134
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
+ +++ + +++i+++EG+ + +gLY+Glg++l
R11.1 135 ------------------EQRSTASMAREIYRNEGFGT-SGLYRGLGATL 165
lrvapygaaiyFgtYEqlKklllkkkge<-*
r++ + +++yFg Y +++++++ k++
R11.1 166 GRHGAW-NMVYFGLYHSCREVIPDAKQN 192
mito_carr: domain 3 of 3, from 196 to 288: score 82.9, E = 2.9e-21
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+++ +++ G +AG +a+++ P+Dv+K R+Q + + +
R11.1 196 NLIGRIALGFTAGSLASIFNIPFDVAKSRIQGPQPDPFT-------- 234
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
rkY+g+++++ ++keEG + ++LYkGl+p +
R11.1 235 -----------------RKYSGTMQTISLVYKEEG-F--GALYKGLLPKV 264
lrvapygaaiyFgtYEqlKklllkk<-*
+r +p+ +a+++ +Y+ + +l+k+
R11.1 265 MRLGPG-GAVMLIVYDEVYSWLQKN 288