Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R11F4.1
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Query: R11F4.1 CE04828 Glycerol kinase status:Confirmed SW:Q21944 protein_id:AAA79749.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FGGY FGGY family of carbohydrate kinases, N-ter 338.5 7.4e-98 1
FGGY_C FGGY family of carbohydrate kinases, C-ter 153.8 2.9e-42 1
proteasome Proteasome A-type and B-type 5.9 1.7 1
FlgM Anti-sigma-28 factor, FlgM 4.6 4.7 1
GSPII_E Type II/IV secretion system protein 3.9 2.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
proteasome 1/1 45 76 .. 161 194 .] 5.9 1.7
GSPII_E 1/1 62 85 .. 275 300 .. 3.9 2.2
FGGY 1/1 3 253 .. 1 262 [] 338.5 7.4e-98
FlgM 1/1 410 427 .. 85 102 .] 4.6 4.7
FGGY_C 1/1 256 477 .. 1 227 [. 153.8 2.9e-42
Alignments of top-scoring domains:
proteasome: domain 1 of 1, from 45 to 76: score 5.9, E = 1.7
*->nlteeeavelakkalkialdrdvysggnievaei<-*
+++++e+ ++++ +++++++ ++ + i++ ei
R11F4.1 45 EMDPMELYDTVVSCISKTIE--KLENLGISADEI 76
GSPII_E: domain 1 of 1, from 62 to 85: score 3.9, E = 2.2
*->altRLldmGveafllaSsllliiAQR<-*
++ +L ++G++a++++S +++ QR
R11F4.1 62 TIEKLENLGISADEIKS--VGVANQR 85
FGGY: domain 1 of 1, from 3 to 253: score 338.5, E = 7.4e-98
*->yvlGiDcGTtstKAivfdskqGkvvasasakyalisPkpssgwaEqD
+ +iD+GT+s++++vf +G++v s++++ + +P+ gw+E D
R11F4.1 3 LLAAIDQGTSSSRFLVFEADTGELVTSHQIEVRQLFPHG--GWVEMD 47
PeeiwqallqairkileqskqsgisakqIkgIgiSgQmhglvllDkndGk
P+e+++++ ++i k++e++ ++gisa++Ik +g+++Q+++ +++Dk++Gk
R11F4.1 48 PMELYDTVVSCISKTIEKLENLGISADEIKSVGVANQRETSIVWDKETGK 97
PLypAIlWnDtRTaeiveeLkek..lggadklyeiTGltllpgfTlsKLr
PLy+AI+W DtRT++ ++e ++++ + d ++++TGl+++p+f++ KL+
R11F4.1 98 PLYNAIVWLDTRTSSLADEAISRtaSKSKDEFRAKTGLPIHPYFSALKLK 147
WlkenePeiferirkgelkfllikdYLrwrLTGvGkqftTDysdASgtmm
Wl +n+Pe+ ++ + g l f++++++L+w+LTG ++TD+s+AS+t +
R11F4.1 148 WLFQNVPEVKKAYADGNLMFGTVDTWLIWKLTG---AYVTDVSNASRTLL 194
fniktleWDeelLailGIppdielLPplvesseiyGtlnpeaaallGLde
+++++++W+++l++++++p + +LP++++s+e+yG+ + ++
R11F4.1 195 LDLHKRKWSTQLCEFFDLPIE--ILPEIRSSAEVYGHFDKGPLEG----- 237
niPVvgGggDnaaaalG<-*
+P +g++gD++aa +G
R11F4.1 238 -VPLSGCLGDQQAAMVG 253
FlgM: domain 1 of 1, from 410 to 427: score 4.6, E = 4.7
*->eYkVDteklAkklldFek<-*
++kVD + +A kl+++++
R11F4.1 410 TLKVDGGMIANKLFNEIQ 427
FGGY_C: domain 1 of 1, from 256 to 477: score 153.8, E = 2.9e-42
*->aidegqavvSlGTsgvllavtqkkdtdsegglayfahaldGrdnpgn
+ +gq ++++GT+ ++l++++ +++ s++gl++++ G d+p+
R11F4.1 256 CLNAGQTKNTYGTGTFMLCNIGTRPIISKNGLLTTVGFQFGADSPVV 302
wylmgvvlnaggvleWlrdllgslvlinfdelneaaaqaveganGvlflP
++l+g+ ++g v++ lrd+++ i+++ e + ++ve ++G +f+P
R11F4.1 303 YALEGSGSIGGNVVRFLRDNFK---FISDAKEMEGLCRSVEDTSGAYFVP 349
yldGeraPlwdpsvrGsffGLtsnttrghllRAaLEGviyslrdgLdamq
++G+++P+wd ++rG + GLt+ t+r+h++ AaL +v+++ ++ + a++
R11F4.1 350 SFTGLYTPYWDSTARGTILGLTQVTQREHICLAALRAVAFQSAEMIAAVE 399
ad..sgikastlrviGGgAksnlWmQmqADilnlpVvvpeieEttaLGAA
+d ++g+k+ tl v+GG+ ++l + +qADi+++ +v+p+i E ++ GAA
R11F4.1 400 QDleGGTKVTTLKVDGGMIANKLFNEIQADIMGRDIVTPKITEISGWGAA 449
mlAaaaeVGvfeslaEasqalnlerkkhyPpe<-*
++++++ + sl+E +q+ ++ + y p+
R11F4.1 450 VAGGIGA-QQ-ISLDEFLQQSSEDNR--YTPQ 477