Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R11G11.14
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Query: R11G11.14 CE28762 lipase status:Partially_confirmed TR:O16956 protein_id:AAC69088.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
abhydro_lipase ab-hydrolase associated lipase region 157.6 1.2e-43 1
abhydrolase alpha/beta hydrolase fold 33.8 2.2e-09 1
ATP-synt_8 ATP synthase protein 8 7.0 0.29 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
abhydro_lipase 1/1 22 93 .. 1 71 [] 157.6 1.2e-43
ATP-synt_8 1/1 124 139 .. 41 56 .] 7.0 0.29
abhydrolase 1/1 107 175 .. 1 57 [. 33.8 2.2e-09
Alignments of top-scoring domains:
abhydro_lipase: domain 1 of 1, from 22 to 93: score 157.6, E = 1.2e-43
*->idpeanmnvsqlIkkwGYpsEeHtVtTeDGYILtLhRIprgkknktd
dpe++m+++q+I++wGYp+++++VtT+DGYIL+LhRIp+gk+n+t+
R11G11.14 22 SDPELHMTTPQIIERWGYPAMIYSVTTDDGYILELHRIPHGKTNVTW 68
.lgkrPvVlLQHGLlasSsnWVvNl<-*
++gk PvV++QHGLl++S++W +Nl
R11G11.14 69 pNGKQPVVFMQHGLLCASTDWTMNL 93
ATP-synt_8: domain 1 of 1, from 124 to 139: score 7.0, E = 0.29
*->ktklkkkpnpWnWkWT<-*
k+ + +++ +W+W W
R11G11.14 124 KNLKASHSDFWEWSWD 139
abhydrolase: domain 1 of 1, from 107 to 175: score 33.8, E = 2.2e-09
*->frvillDlrGfGeSsp.............sdlaeyrfddlaedleal
f+v+l+++rG +S ++++ + ++++ + ++e + dl ++++++
R11G11.14 107 FDVWLGNMRGNTYSMKhknlkashsdfweWSWDEMATYDLPAMIDKV 153
ldalglekpvilvGhSmGGaial<-*
l+ +g+e +++ GhS+G+++++
R11G11.14 154 LEVTGQES-LYYMGHSQGTLTMF 175