hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R12E2.10
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Query:  R12E2.10  CE18142   protein-tyrosine phosphatase status:Partially_confirmed TR:O61789 protein_id:AAC17031.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              244.9    1.1e-69   1
UPF0103       Protein of unknown function DUF52           1.7        8.9   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
UPF0103         1/1     374   384 ..     1    11 [.     1.7      8.9
Y_phosphatase   1/1     432   660 ..     1   274 []   244.9  1.1e-69

Alignments of top-scoring domains:
UPF0103: domain 1 of 1, from 374 to 384: score 1.7, E = 8.9
                   *->ePavAGsfYpe<-*
                      + +vAG+fY++
    R12E2.10   374    RVRVAGQFYNN    384

Y_phosphatase: domain 1 of 1, from 432 to 660: score 244.9, E = 1.1e-69
                   *->NkeKNRykdilpyDhtRVkLk.....egsDYINAnyidgpqsrtlvv
                      N+eK+R + + + D+tR+ L+ ++++  +D+I+An i g
    R12E2.10   432    NQEKCRNPRVHCRDSTRIALQfprgqYLGDFIHANRISG-------- 470

                   ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtC
                    +  +++I+TQ+P++nT++DFWrMvw++ v++IVMLt+  E  r     C
    R12E2.10   471 KPLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER-----C 515

                   aqYWPeeggeeggsltyG..ditVtlvseekkddddytvRtleltn.gde
                   ++YWP      +++ +  ++++++++  +++   +d   R+  l+  g++
    R12E2.10   516 EYYWPK---SPSDPAVTVpgGLRIENFGVYQ--APDPLFRVTHLRLiGPD 560

                   skneakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqs
                              +e+r+V h++     D +  ++   s l++lr +r++++
    R12E2.10   561 -----------REERHVEHWQ----GDVNNSSN-MYSPLNILRLLRNASK 594

                   qenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaeg
                                       P+v+H + G++R+++++a++i++++l ++
    R12E2.10   595 --------------------PVVIHDHLGVSRAACLVAAEIAICSLLRGP 624

                   vv.idifdivkelRsqRpgmVQteeQYiFiydaile<-*
                   + ++ +  +v+ lR+ Rp++++t++QYiF+++ ++
    R12E2.10   625 TYkYPVQRAVQFLRQRRPFSIETPMQYIFVHRLVAF    660

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