Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R13A5.12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: R13A5.12 CE21123 status:Confirmed TR:Q95Y89 protein_id:AAK84463.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BRCT BRCA1 C Terminus (BRCT) domain 40.9 3.4e-11 1
WT1 Wilm's tumour protein 2.6 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BRCT 1/1 311 398 .. 1 99 [] 40.9 3.4e-11
WT1 1/1 429 441 .. 1 13 [. 2.6 6.9
Alignments of top-scoring domains:
BRCT: domain 1 of 1, from 311 to 398: score 40.9, E = 3.4e-11
*->eklfsgltfvltgtknaaviieamldseer.elkelieklGGkvt.s
f+g++f+l ++ ++++ l ++i++ GG v +
R13A5.12 311 KTMFKGCVFYLNRE-------------CPKeALTFIIRNGGGIVGwE 344
l........skktthvivgenagsklekalkaialgipivteeWlldcik
++++ + +sk+++h +v+++ kle ++ v ++W++dc++
R13A5.12 345 GgptdlkadSKNISHHVVDRPM-DKLEVNRL-------YVQPQWVFDCLN 386
egkllpedpyll<-*
++ lp ++y
R13A5.12 387 ARRKLPTERYMP 398
WT1: domain 1 of 1, from 429 to 441: score 2.6, E = 6.9
*->mGsDvRDLnALLP<-*
mG Dv DL A +P
R13A5.12 429 MGKDVSDLEAAIP 441