Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R17.2
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Query: R17.2 CE16315 status:Partially_confirmed TR:O18005 protein_id:CAB07271.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa 107.2 1.9e-28 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Exo_endo_phos 1/1 307 626 .. 1 189 [] 107.2 1.9e-28
Alignments of top-scoring domains:
Exo_endo_phos: domain 1 of 1, from 307 to 626: score 107.2, E = 1.9e-28
*->lkvltwNvnglra.l.l............................ll
++++++N++ + + ++++ + ++++++ +++ ++l+
R17.2 307 IRIMSYNILADLYlNlTlpqeqlffnycqkssqriiyrtpiflkqLH 353
ellr.edpDvlgLQEvkls.e.lll.l.ll.gyy...gfgg.gggkgGva
+++++ ++ +++LQEv+ls+ +++ + l++ +y++ + g+ + Gva
R17.2 354 DFIHsARCSLIFLQEVDLSrHeNFIvPfLNtISYsseIAKKvGTVSEGVA 403
ilsklpllsvilgi.................................dli
i++ ++++vi + + + +++ + +++++++++ +++++ +++
R17.2 404 IIFDSQRFQVISSKcygvaelasgdilgiletseeskerfstrptvlQIV 453
.rvistsgt.fvvvntHlpag....deRlaqlaelldflsf.........
++ s +g+ +v ntHl++++ ++ +++ q+ + ++l + +++++ +
R17.2 454 vLKDSRTGKlLVCGNTHLHHNpideHVKVLQALTCTRKLLEiyeetreln 503
..ksdpvillGDfNarpdewds.lle.igk....................
++ v+++GDfN+ p+ +++l++ +++++++ + +++ ++++ +
R17.2 504 kgIEVLVLFGGDFNSTPNGAVFnLMSmGNLpkedavwncdskitpqdiki 553
........igfppTywsyrgssekkrtpsrlDrilvsg.ll.rvvsl.il
+++ + ++++++T+++ ss k ++ ++lD+i+ g r++ l+++
R17.2 554 dkkmdcltGTPEYTNYTA--SSQKDGFVGCLDYIWGVGaTSiRHCPLpSH 601
le..........vlgSDHrPvlatl<-*
+ + + ++++ +SDH P+++++
R17.2 602 EKvikytalpspISPSDHLPIICDI 626