hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R17.2
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Query:  R17.2  CE16315    status:Partially_confirmed TR:O18005 protein_id:CAB07271.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa   107.2    1.9e-28   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Exo_endo_phos   1/1     307   626 ..     1   189 []   107.2  1.9e-28

Alignments of top-scoring domains:
Exo_endo_phos: domain 1 of 1, from 307 to 626: score 107.2, E = 1.9e-28
                   *->lkvltwNvnglra.l.l............................ll
                      ++++++N++   + +   ++++   +  ++++++   +++   ++l+
       R17.2   307    IRIMSYNILADLYlNlTlpqeqlffnycqkssqriiyrtpiflkqLH 353

                   ellr.edpDvlgLQEvkls.e.lll.l.ll.gyy...gfgg.gggkgGva
                   +++++ ++ +++LQEv+ls+ +++  + l++ +y++    + g+ + Gva
       R17.2   354 DFIHsARCSLIFLQEVDLSrHeNFIvPfLNtISYsseIAKKvGTVSEGVA 403

                   ilsklpllsvilgi.................................dli
                   i++  ++++vi  +  +  +  +++  +  +++++++++ +++++  +++
       R17.2   404 IIFDSQRFQVISSKcygvaelasgdilgiletseeskerfstrptvlQIV 453

                   .rvistsgt.fvvvntHlpag....deRlaqlaelldflsf.........
                    ++ s +g+ +v  ntHl++++ ++ +++ q+ +  ++l +  +++++ +
       R17.2   454 vLKDSRTGKlLVCGNTHLHHNpideHVKVLQALTCTRKLLEiyeetreln 503

                   ..ksdpvillGDfNarpdewds.lle.igk....................
                   ++    v+++GDfN+ p+  +++l++ +++++++   + +++ ++++ +
       R17.2   504 kgIEVLVLFGGDFNSTPNGAVFnLMSmGNLpkedavwncdskitpqdiki 553

                   ........igfppTywsyrgssekkrtpsrlDrilvsg.ll.rvvsl.il
                   +++ +  ++++++T+++   ss k ++ ++lD+i+  g    r++ l+++
       R17.2   554 dkkmdcltGTPEYTNYTA--SSQKDGFVGCLDYIWGVGaTSiRHCPLpSH 601

                   le..........vlgSDHrPvlatl<-*
                   +   + +  ++++ +SDH P+++++
       R17.2   602 EKvikytalpspISPSDHLPIICDI    626

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