Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T01B7.4
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Query: T01B7.4 CE03588 locus:cyp-11 peptidyl-prolyl cis-trans isomerase status:Confirmed SW:P52018 protein_id:CAA91297.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr 309.2 4.5e-89 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pro_isomerase 1/1 18 183 .] 1 179 [. 309.2 4.5e-89
Alignments of top-scoring domains:
pro_isomerase: domain 1 of 1, from 18 to 183: score 309.2, E = 4.5e-89
*->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfg.kkl
+v++++t+gg+p+G Iv+eLf+dv+P TaeNFr+ ctge ++ + +
T01B7.4 18 IVFLEVTAGGAPIGTIVIELFADVTPRTAENFRQFCTGEYKKDgVPN 64
fYkGstFHRVIpnFMiQGGDftagnqGtGGkSIYGekFkDEnfnlkHdrh
+Yk+ tFHRVI++FMiQGGDf +g+ GtG SIYG+kF DEnf+lkH +
T01B7.4 65 GYKNCTFHRVIKDFMIQGGDFCNGD-GTGLMSIYGSKFRDENFELKHIG- 112
epGtLSMANaGdpnTNGSQFFItTvktpwLDGKHVvdfGYAVFGkVveGm
pG+LSMANaG +TNG+QFFIt +kt++LD+KHV VFG V +Gm
T01B7.4 113 -PGMLSMANAG-SDTNGCQFFITCAKTDFLDNKHV------VFGRVLDGM 154
dVVkkIenvgtdeyGksgdkpskeVkIadcgql<-*
V+kIenv+t +++kp+ +++++ cgql
T01B7.4 155 LTVRKIENVPTG----ANNKPKLPIVVVQCGQL 183