Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T01C3.6
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Query: T01C3.6 CE12918 locus:rps-16 40S ribosomal protein S16 status:Confirmed SW:Q22054 protein_id:CAB01658.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_S9 Ribosomal protein S9/S16 249.9 3.9e-77 1
Pyridox_oxidase Pyridoxamine 5'-phosphate oxidase 1.9 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pyridox_oxidase 1/1 96 117 .. 1 22 [. 1.9 4.6
Ribosomal_S9 1/1 12 144 .] 1 136 [] 249.9 3.9e-77
Alignments of top-scoring domains:
Pyridox_oxidase: domain 1 of 1, from 96 to 117: score 1.9, E = 4.6
*->seedkgkpielanirdeYtkkv<-*
++d++ ++el+ni + Y+k++
T01C3.6 96 KYVDEQSKRELKNIFAAYDKSL 117
Ribosomal_S9: domain 1 of 1, from 12 to 144: score 249.9, E = 3.9e-77
*->GRRKSAvArvfvkpPkDGnGkIlvNgrpielyfpeelrrkvveppLl
GR+K+A+A++++k G G+I+vNgrp+e +p +lr+k+ ep+Ll
T01C3.6 12 GRKKTATAVAHCKK---GQGLIKVNGRPLEFLEPQILRIKLQEPLLL 55
lvedrvgnyDirvrVkGGGisGQAdAIRhAIArALvafdpKyVDeqskkE
++++r+ +Dir+rV+GGG+++Q++A R+A A+ALva++ KyVDeqsk E
T01C3.6 56 VGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRE 105
LedrsklydrglLtrDpRqtErKKyGlkkARkrpQkSkR<-*
L+ +++ yd +lL++DpR+ E+KK+G+++AR+r+QkS+R
T01C3.6 106 LKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144