Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T01D3.5
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Query: T01D3.5 CE12962 status:Confirmed TR:Q9XVJ5 protein_id:CAB03256.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Zip ZIP Zinc transporter 260.7 2e-74 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Zip 1/1 4 376 .. 1 363 [] 260.7 2e-74
Alignments of top-scoring domains:
Zip: domain 1 of 1, from 4 to 376: score 260.7, E = 2e-74
*->lllkiyaifalllisligvllplllplmksavatttesdlraskkll
+++ ++++ a++++s++++++pl++ l +s ++
T01D3.5 4 VSFLLVLSSAMFFGSYMAGSIPLMFSLSES---------------RI 35
sfllaFAaGvlLgtaflHLLPealealeslclehtpwhdfpfhpdssn..
++++ F+aG l+gta+ ++Pe++eal++ +++ ++h +++h ++ ++
T01D3.5 36 RLVSIFGAGLLVGTALSVIIPEGIEALYGAQCGAVHQHNHHDHINPVVsp 85
..................................................
++ ++ + ++ ++ ++++++ ++ +++ ++ ++ ++++ +++
T01D3.5 86 egaivnpaeakqilenakdkednlpriipknavlneaigrvvrsppaspd 135
.....................................aglivllGfllfl
++++++++ ++++++++++++++++++++++ + ++g +++lGf+l+l
T01D3.5 136 tpsrkkrdvlvethsnnehdekeheekqhshgnihaqIGYSLVLGFVLML 185
lvEklvtllkerkgghghshdhehshteeerhhkkssseeaseehgssea
lv+++ ++ ++r+++ g
T01D3.5 186 LVDQIGSVTVARNDRAGR-------------------------------- 203
peessekekesdsqelelheqsghseeleessaehsdhketrviayllll
++i++ ++
T01D3.5 204 -----------------------------------------SRIGISATI 212
glilHnffdGLAiGasfssstsl.gistflAvlfHelphglGlgaiLlqa
gl++H +dG+A+G+++ +++s+ i++f+A+++H++p+++Gl ++Ll++
T01D3.5 213 GLVVHAAADGVALGSASVINKSDvQIIVFVAIMLHKAPAAFGLVSFLLME 262
gfsrkkAvfPWllnlllfAltapiGialGllissgasygasggadiasgi
r +A+ + +l++f+++ap+ +++ +++++++ g+s++++ ++g+
T01D3.5 263 SIDR-RAI---RKHLVVFSAAAPLAALVTFVLIMQM--GESMRSESSTGV 306
llafsAGtFlYvAlvellPeelassks.............n.ssgqsdlk
l+ fsAGtFlYvA+v++lPe+ +++ + + + + ++++++s++s+
T01D3.5 307 LMLFSAGTFLYVATVHVLPELANNKQTeyslvvdatapssIgHSHSSGAS 356
lsllqllalllGfalMllia<-*
+ +++ll +++G+ +++++a
T01D3.5 357 YTIKELLLIIGGAVVPAILA 376