Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T01H10.8
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Query: T01H10.8 CE03607 Yeast hypothetical protein YCR32 like status:Partially_confirmed TR:Q21547 protein_id:CAA91946.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Beach Beige/BEACH domain 680.3 9.8e-201 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Beach 1/1 2019 2305 .. 1 287 [] 680.3 9.8e-201
Alignments of top-scoring domains:
Beach: domain 1 of 1, from 2019 to 2305: score 680.3, E = 9.8e-201
*->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
TkRW++G++SNFeYL++LN++AGR+++D+s++P+FP+IlA+++++s+
T01H10.8 2019 TKRWEEGKMSNFEYLTMLNLFAGRTIHDSSSSPIFPRILAKFGDKSV 2065
DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeek.evppFHYGtH
DL++++++R+L++P++AQ+p+++e+++e+Y++l+++ee+++++p+H+G++
T01H10.8 2066 DLQDKTIYRKLDRPVAAQDPVSVEKHKEHYNELKENEEIsHLTPYHFGSM 2115
YSSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslen
+S++g+V+f++iRl PF+ee+++LQ+G+FD++DRlFh+ie++++++++e+
T01H10.8 2116 CSNRGVVSFFNIRLLPFGEEAIELQDGRFDFPDRLFHNIESGLGLGKIES 2165
mtDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKA
++D+KEL+PE+F+++E+L+N+ng+++G++QnGe+VnDVd+P+W+++DEKA
T01H10.8 2166 SNDYKELVPELFTTVEVLRNDNGNQFGEKQNGETVNDVDVPQWCYMDEKA 2215
dPeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhlt
++e+Fi++hR+ALES++V+++LH+WIDL+FGYK+rGk+A++AiNV+h+++
T01H10.8 2216 VHENFIYLHRHALESEIVQSMLHHWIDLVFGYKSRGKSAHDAINVYHPAV 2265
YeGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
Y+G+++++s+++ v+++A+ea++k++G++P+QLFt++HPkR
T01H10.8 2266 YPGNSPPPSFDR-VMTNAYEANQKTLGTAPIQLFTQSHPKR 2305