Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T02E1.3b
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T02E1.3b CE18171 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Partially_confirmed TR:O02289 protein_id:CAB04666.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and simil 74.8 6.1e-21 2
CBS CBS domain 10.0 0.54 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-CCCH 1/2 70 96 .. 1 27 [] 44.5 9.6e-12
CBS 1/1 500 536 .. 1 37 [. 10.0 0.54
zf-CCCH 2/2 653 679 .] 1 27 [] 36.1 3.5e-09
Alignments of top-scoring domains:
zf-CCCH: domain 1 of 2, from 70 to 96: score 44.5, E = 9.6e-12
*->yktelCrffsrtGtCkyGdrCkFaHge<-*
kt++C++++r+G+C+yGd+C +aHge
T02E1.3b 70 RKTKICDHWRRSGSCSYGDACWYAHGE 96
CBS: domain 1 of 1, from 500 to 536: score 10.0, E = 0.54
*->dimtrdvvtvspdttleealelmrengisrlPVvded<-*
++ tr t++++ + + +l +m + + +P++de+
T02E1.3b 500 MTRTRGAATINESSSAASLLTKMDALRSDKYPITDEE 536
zf-CCCH: domain 2 of 2, from 653 to 679: score 36.1, E = 3.5e-09
*->yktelCrffsrtGtCkyGdrCkFaHge<-*
+ e+C+ff++tG+C++Gd+C+ +H+
T02E1.3b 653 SFLEPCDFFAATGSCPFGDACHQSHSI 679