Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T02E9.3
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Query: T02E9.3 CE13066 G-protein coupled receptor status:Partially_confirmed TR:O45732 protein_id:CAB07650.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_1 7 transmembrane receptor (rhodopsin family) 242.3 7.5e-78 1
DnaJ DnaJ domain 6.6 3.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DnaJ 1/1 357 370 .. 66 79 .] 6.6 3.5
7tm_1 1/1 38 735 .. 1 275 [] 242.3 7.5e-78
Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 357 to 370: score 6.6, E = 3.5
*->LsDpekRaiYDqyg<-*
LsD++kR iY + +
T02E9.3 357 LSDERKRVIYERRR 370
7tm_1: domain 1 of 1, from 38 to 735: score 242.3, E = 7.5e-78
*->GNlLVilvilrtkklr.tptnifilNLAvADLLflltlppwalyylv
GN +Vi++++ +klr+ +tn fi +LAv+DLL++l ++p +lyy +
T02E9.3 38 GNTMVIFAVAVDRKLRsVTTNKFIASLAVSDLLVGLIVMPLSLYYKM 84
ggsedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrr
++ ++W++G+ C + ++v++++aSi +L+aIS+DRY AI+ P +y+r
T02E9.3 85 HN-DHWTLGYTWCQFHLVSGVFSTTASIVHLVAISLDRYFAIMFPTEYQR 133
rrtsprrAkvvillvWvlalllslPpllfswvktveegngtlnvnvtvCl
+ ++ ++ +W++al++s f+ ++++++g +C+
T02E9.3 134 HSV-STSTVPYVVMIWLMALAVSSTL--FMEQRDSFDG---------ICW 171
idfpeestasvstwlvsyvllstlvgFllPllvilvcYtrIlrtlrkrar
i+ + +y++ls++++F+lP + +++Y+ I+++lr++
T02E9.3 172 IS---NP---------QYIVLSSFLSFFLPGAIVVYLYMKIFKKLRNHQL 209
kgas..............................................
+ + ++++++++++++ ++ ++ +++++++ +++++++++++++++
T02E9.3 210 YMFGqlthrggererrhslprviieevrsrrgsrmsqtgsqsgsptrrqs 259
..................................................
++++++++++++ + +++++ ++++ ++ +++ +++ + ++
T02E9.3 260 ggskerspsqpdihivakpqqrwrspticaetlahdrllaakkrvsivpd 309
..................................................
+++ + + + + ++ +++++++ ++++ + + +++++++++ ++ ++
T02E9.3 310 ppsmdvsvnmasidqmkdehhhnlmreeellgceagrrkqseeevrklsd 359
..................................................
++++ +++++++++++++ + + ++ ++ + ++++++ ++ + +
T02E9.3 360 erkrviyerrrsstsenpngipimqafqkayqevragrrrstihditayh 409
..................................................
++ ++ +++ +++++++ +++++++++++ ++ +++++ ++ +
T02E9.3 410 fpslttvnepatpppgedceekekdsdgtsimhklssgssiaetviamlp 459
..................................................
++++ +++++++++ +++ ++++ ++++++ +++++++++++ +++ +
T02E9.3 460 ktstlsktdshessvsteasqkpllgppthhytkksqtqkepryspsipa 509
..................................................
++ + ++++ ++++++ +++ ++ + ++ + +++ + ++++
T02E9.3 510 ptflmvpammavntppatpntkeaptnctsllqvprlfdcpspcsvpsns 559
..................................................
++++ ++ ++++++ ++ + ++ +++ +++++++ + ++++++ ++ +
T02E9.3 560 shssytsasgssdtyrrismnsygssltdgtestfecdsrrssawstira 609
..................................................
++++ ++++ + + + +++++++++ ++ ++++ ++ ++ ++ ++
T02E9.3 610 avfdrqqmrggkasvditvdrtgspqkkmstisrgklrriatqvtrairr 659
....kkrsskerkaaktllvvvvvFvlCWlPyfivllld.tlc.lsiims
++++ + ++e +a++++++++++F++CW Pyf + + +++l+++ i +
T02E9.3 660 krreSMAIRRESRATRVVAAILIAFLICWIPYFCISIFRgVLMgFQIN-I 708
stCelervlptallvtlwLayvNsclNPiIY<-*
+t ++ t++ +t wL+y++sc+NP+IY
T02E9.3 709 NTP----IHLTLFVYTSWLGYAHSCFNPLIY 735