hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T02G5.8
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Query:  T02G5.8  CE29990   acetoacetyl-C0A thiolase status:Confirmed TR:Q22100 protein_id:AAA82397.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
thiolase       Thiolase, N-terminal domain              403.6   1.9e-117   1
thiolase_C     Thiolase, C-terminal domain              181.5    1.3e-50   1
ketoacyl-synt  Beta-ketoacyl synthase, N-terminal dom    11.5      0.045   1
Chal_stil_synt Chalcone and stilbene synthases, N-ter     3.0        7.6   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
ketoacyl-synt    1/1     108   139 ..   218   250 ..    11.5    0.045
Chal_stil_synt   1/1     268   279 ..   217   228 .]     3.0      7.6
thiolase         1/1      21   279 ..     1   274 []   403.6 1.9e-117
thiolase_C       1/1     284   406 ..     1   142 []   181.5  1.3e-50

Alignments of top-scoring domains:
ketoacyl-synt: domain 1 of 1, from 108 to 139: score 11.5, E = 0.045
                   *->CSSSlLvAlhlAvqslRrGecDlAlAGGVnlml<-*
                      CSS+ L A+ lA q++++G+ D A+ GG + m+
     T02G5.8   108    CSSG-LKAIILAAQQIQTGHQDFAIGGGMESMS    139

Chal_stil_synt: domain 1 of 1, from 268 to 279: score 3.0, E = 7.6
                   *->DGAAAvIiGaDP<-*
                      DGAAAvI+ +
     T02G5.8   268    DGAAAVIVASQE    279

thiolase: domain 1 of 1, from 21 to 279: score 403.6, E = 1.9e-117
                   *->mkdVVIVsAaRTPiGKsfgGslkdlpAvdLgaiaikaaLeragippe
                       k  +IV+AaRTPiG sf+ sl++++A +L+++aikaaLer  ++p+
     T02G5.8    21    NKHAFIVGAARTPIG-SFRSSLSSVTAPELASVAIKAALERGAVKPS 66

                   pkaVdevimGnVLqageaGqnpARqAaLlAGiPesvPaiTvNkvCgSGlk
                      ++ev +G+V qa++ Gq+pARqAaL+AG+  sv+  TvNkvC+SGlk
     T02G5.8    67 --SIQEVFLGQVCQANA-GQAPARQAALGAGLDLSVAVTTVNKVCSSGLK 113

                   AvalaaQaIraGdaDivvAGGvEsMSnaPyvlprnaarsgarmGdaklvD
                   A++laaQ+I++G++D  + GG+EsMS++P ++     r    +G  +++D
     T02G5.8   114 AIILAAQQIQTGHQDFAIGGGMESMSQVPFYVQ----RGEIPYGGFQVID 159

                   tmlkdgltdafnlyhMGiTAEnvAkkygISReeQDeFAlrSqqKAaaAqk
                   +++kdgltda+++ hMG ++E+  k+ gI+R++QDe+A++S++K+a+A++
     T02G5.8   160 GIVKDGLTDAYDKVHMGNCGEKTSKEMGITRKDQDEYAINSYKKSAKAWE 209

                   aGkFkdEIvPVtikgldrkGkpKitvdtDEgiRpgtTlEsLakLkPAFdK
                   +G    E+vPV++k+  +kG   ++vd+DE+  + +++++  +L+++F+K
     T02G5.8   210 NGNIGPEVVPVNVKS--KKGV--TIVDKDEEFTK-VNFDKFTSLRTVFQK 254

                   RenGTVTAGNASglnDGAAAvllMsEs<-*
                    + GT+TA+NAS lnDGAAAv+++s +
     T02G5.8   255 -D-GTITAANASTLNDGAAAVIVASQE    279

thiolase_C: domain 1 of 1, from 284 to 406: score 181.5, E = 1.3e-50
                   *->lGlkplArivsyavvGvdPksimgigPvyAipkaLkkaGLtvnDiDl
                        lkplAri +y+++++ P  ++ ++P++  pk L++aG + +D+
     T02G5.8   284    QSLKPLARILAYGDAATHP-LDFAVAPTLMFPKILERAGVKQSDVAQ 329

                   fEiNEAFAaQaLavakaLgldpegkqmrdgdntyggkeKVNvnGGAIALG
                   +E+NEAF+ + La +k+Lg+dp               + VN++GGA+++G
     T02G5.8   330 WEVNEAFSCVPLAFIKKLGVDP---------------SLVNPHGGAVSIG 364

                   HPlGaSGARilvtLlheLkrrgggkyGlaalCiGGGqGvAmvver<-*
                   HP+G+SGAR++++L+h Lk    g++G+aa+C+GGG+ + mv+++
     T02G5.8   365 HPIGMSGARLITHLVHTLKS---GQIGVAAICNGGGGSSGMVIQK    406

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