Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T03F1.11
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Query:  T03F1.11  CE13116    status:Confirmed TR:P91423 protein_id:AAB42239.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
efhand   EF hand                                         37.9    1.4e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
efhand     1/2       1    25 [.     5    29 .]    12.8     0.12
efhand     2/2      41    69 ..     1    29 []    29.6  2.7e-06

Alignments of top-scoring domains:
efhand: domain 1 of 2, from 1 to 25: score 12.8, E = 0.12
                   *->aFkefDkDgDGkIsfeEfkaalkkl<-*
                      +F++ DkD +G+Is+++ + +l
    T03F1.11     1    MFSLHDKDMSGFISKDDVICMLLGA    25

efhand: domain 2 of 2, from 41 to 69: score 29.6, E = 2.7e-06
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       l +++ke+DkDgD kI+f+Efk+++ k+
    T03F1.11    41    FLIQVIKEADKDGDSKITFDEFKEYINKV    69



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