Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T03F1.11
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Query: T03F1.11 CE13116 status:Confirmed TR:P91423 protein_id:AAB42239.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
efhand EF hand 37.9 1.4e-08 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
efhand 1/2 1 25 [. 5 29 .] 12.8 0.12
efhand 2/2 41 69 .. 1 29 [] 29.6 2.7e-06
Alignments of top-scoring domains:
efhand: domain 1 of 2, from 1 to 25: score 12.8, E = 0.12
*->aFkefDkDgDGkIsfeEfkaalkkl<-*
+F++ DkD +G+Is+++ + +l
T03F1.11 1 MFSLHDKDMSGFISKDDVICMLLGA 25
efhand: domain 2 of 2, from 41 to 69: score 29.6, E = 2.7e-06
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
l +++ke+DkDgD kI+f+Efk+++ k+
T03F1.11 41 FLIQVIKEADKDGDSKITFDEFKEYINKV 69