hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T03F6.2
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Query:  T03F6.2  CE16336  locus:dnj-17 DnaJ, prokaryotic heat shock protein, Zinc finger, C2H2 type status:Partially_confirmed TR:O62360 protein

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
DnaJ          DnaJ domain                               119.0    9.1e-32   1
zf-C2H2       Zinc finger, C2H2 type                     12.7       0.43   2
DUF536        Protein of unknown function, DUF536         6.8        2.9   1
cytochr_b559a Lumenal portion of Cytochrome b559, alp     4.5        5.2   1
SET           SET domain                                  4.5        3.6   1
DUF646        Bacteriophage protein of unknown functi     4.0        6.2   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
DnaJ            1/1      28    94 ..     1    79 []   119.0  9.1e-32
cytochr_b559a   1/1      77    97 ..     1    22 [.     4.5      5.2
DUF646          1/1     242   253 ..   162   173 .]     4.0      6.2
DUF536          1/1     240   273 ..     1    40 [.     6.8      2.9
SET             1/1     263   283 ..   244   265 .]     4.5      3.6
zf-C2H2         1/2     318   340 ..     3    24 .]     4.2       57
zf-C2H2         2/2     454   478 ..     1    24 []    11.7     0.74

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 28 to 94: score 119.0, E = 9.1e-32
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktlerae
                      ++Ye+L+v+rdA+d+ IKK YRkLAlk+HPDKNp+
     T03F6.2    28    CHYEVLEVERDADDDKIKKNYRKLALKWHPDKNPDRI---------- 64

                   skeeAeekFkeIneAYevLsDpekRaiYDqyg<-*
                     ee++++F+ +++AY+vLsDp+ R+ YD+++
     T03F6.2    65 --EECTQQFRLLQAAYDVLSDPREREFYDRHR    94

cytochr_b559a: domain 1 of 1, from 77 to 97: score 4.5, E = 5.2
                   *->laYDvFGtPRPdEYFtetRqev<-*
                       aYDv   PR  E++  +R  +
     T03F6.2    77    -AYDVLSDPREREFYDRHRESI    97

DUF646: domain 1 of 1, from 242 to 253: score 4.0, E = 6.2
                   *->efqkiLkrKgge<-*
                      ++++iL++K++e
     T03F6.2   242    AYREILEQKKLE    253

DUF536: domain 1 of 1, from 240 to 273: score 6.8, E = 2.9
                   *->nsvldeQLeekdsriEttldtlkkqikelqkLLDQQQrLa<-*
                      ++ ++e+Le+k       l+  kkq + + k+++ +Q+La
     T03F6.2   240    VKAYREILEQKK------LEAHKKQADNRKKQIAKNQELA    273

SET: domain 1 of 1, from 263 to 283: score 4.5, E = 3.6
                   *->lrdIkaGeELtydYgydlsnge<-*
                      ++ I++++EL ++Y  ++ ++e
     T03F6.2   263    KKQIAKNQELANSYL-NDKEAE    283

zf-C2H2: domain 1 of 2, from 318 to 340: score 4.2, E = 57
                   *->CpfdCgksFsrksnLkrHlrt..H<-*
                      C  +C ksF++     +H ++++H
     T03F6.2   318    CV-VCSKSFKTVNAKLNHENSkqH    340

zf-C2H2: domain 2 of 2, from 454 to 478: score 11.7, E = 0.74
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                        C+ +C ++F ++  L +Hl+ ++H
     T03F6.2   454    AICD-KCREVFDSRTRLFAHLQEtgH    478

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