hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T04A8.9
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Query:  T04A8.9  CE01078  locus:dnj-18 DNAJ status:Confirmed TR:Q22138 protein_id:CAA84728.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DnaJ     DnaJ domain                                    118.2    1.5e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DnaJ       1/1      24    90 ..     1    79 []   118.2  1.5e-31

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 24 to 90: score 118.2, E = 1.5e-31
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktlerae
                      d+Y++LG+ ++As+++IK+AY+kL++++HPD Np ++
     T04A8.9    24    DHYKVLGLAQSASQKDIKSAYYKLSKQHHPDTNPTNK---------- 60

                   skeeAeekFkeIneAYevLsDpekRaiYDqyg<-*
                     eeA++kF++++ AYe+Ls ++kR++YD+++
     T04A8.9    61 --EEAAKKFHQVAMAYEILSSEDKRKAYDMTR    90

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