Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T04C10.4
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Query: T04C10.4 CE06355 transcription factor ATF4 like status:Confirmed TR:Q22156 protein_id:CAA93757.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
bZIP bZIP transcription factor 33.3 5.9e-08 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
bZIP 1/1 136 200 .. 1 65 [] 33.3 5.9e-08
Alignments of top-scoring domains:
bZIP: domain 1 of 1, from 136 to 200: score 33.3, E = 5.9e-08
*->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
+ + K+er+k++NR+AA+r+R++K+ e ee + +e L+ N +L++
T04C10.4 136 KTPEKKERKKAQNRLAATRYREKKRREKEEAMTCIEGLSVTNGKLKD 182
elerLkkevakLksenee<-*
+++L+ e+ + k+ +e
T04C10.4 183 QVSELEREIRYFKKFMTE 200