hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T04C12.6
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Query:  T04C12.6  CE13148  locus:act-1 actin status:Confirmed SW:P10983

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
actin    Actin                                          939.8   1.3e-285   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
actin      1/1       1   376 []     1   379 []   939.8 1.3e-285

Alignments of top-scoring domains:
actin: domain 1 of 1, from 1 to 376: score 939.8, E = 1.3e-285
                   *->msdeevqalvvDnGsgmvKaGfaGddapravfpsivgrpkhkgvmvg
                      m d+ev+alvvDnGsgm+KaGfaGddapravfpsivgrp+h+gvmvg
    T04C12.6     1    MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 47

                   agmdqkdayvgdEaqskrgiltlkYPiehGivtnwddmekiwhhtfYnEL
                     m+qkd+yvgdEaqskrgiltlkYPiehGivtnwddmekiwhhtfYnEL
    T04C12.6    48 --MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95

                   rvapeeHpvLLtEaPlnPKanREkmtqimFEtfnvpamYvaiqavLsLya
                   rvapeeHpvLLtEaPlnPKanREkmtqimFEtfn+pamYvaiqavLsLya
    T04C12.6    96 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 145

                   sGRttGivlDsGDGvsHtvpiyeGyalpHailrldlAGRDLtdylmkiLt
                   sGRttG+vlDsGDGv+HtvpiyeGyalpHailrldlAGRDLtdylmkiLt
    T04C12.6   146 SGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILT 195

                   ergysftttAerEivrdiKEkLcyvAldyeeelktakesseleksyeLpD
                   ergysftttAerEivrdiKEkLcyvAld+e+e++ta++ss+leksyeLpD
    T04C12.6   196 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 245

                   GqvitigneRfrcpevLfqpsllggkEaagihettynsimkCDvDiRkdL
                   Gqvit+gneRfrcpe++fqps+l g+E+agihet ynsimkCD+DiRkdL
    T04C12.6   246 GQVITVGNERFRCPEAMFQPSFL-GMESAGIHETSYNSIMKCDIDIRKDL 294

                   ygnivLsGGttmfpgiaerlskeitalaPssmkikviapPeRkysvWiGG
                   y+n vLsGGttm+pgia+r++keitalaPs+mkik+iapPeRkysvWiGG
    T04C12.6   295 YANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 344

                   silasLstfqqmwitKeeYdesGpsivHrKCf<-*
                   silasLstfqqmwi+K+eYdesGpsivHrKCf
    T04C12.6   345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF    376

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