Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T04D3.3
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Query: T04D3.3 CE16340 3',5' cyclic phosphodieterase status:Partially_confirmed SW:O18696 protein_id:CAB03289.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PDEase 3'5'-cyclic nucleotide phosphodiesterase 370.9 7e-129 1
Exostosin Exostosin family 2.0 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Exostosin 1/1 419 437 .. 389 407 .] 2.0 10
PDEase 1/1 332 542 .. 1 231 [. 370.9 7e-129
Alignments of top-scoring domains:
Exostosin: domain 1 of 1, from 419 to 437: score 2.0, E = 10
*->keiLrsIpeerilemreqv<-*
k+iL + ++++++e+r+ v
T04D3.3 419 KNILTHLTRDEYKELRNMV 437
PDEase: domain 1 of 1, from 332 to 542: score 370.9, E = 7e-129
*->YHNwiHAfdVtQtthlLlltlaleryLtdlEvLalvfAAaiHDvDHr
YHN HA+dVtQ+ h +l ++l + L dlE La +f A+iHD++H+
T04D3.3 332 YHNVVHAADVTQSSHFMLSQTGLANSLGDLELLAVLFGALIHDYEHT 378
GTnNsFqinsLqkSeLAlLYndegSVLEnHHlaqafkLLqdEecnIfqNL
G +N+F+i+s +S A LYnd+ SVLEnHH+++ f+L+ ++ nI+ +L
T04D3.3 379 GHTNNFHIQS--QSQFAMLYNDR-SVLENHHVSSCFRLMKEDDKNILTHL 425
skkdfrtlrdlvieaILATDmslHlqklkdlktmveqkkvyetgvEWtqY
+++++++lr++vie++LATDms H+ ++k++k m++ +++
T04D3.3 426 TRDEYKELRNMVIEIVLATDMSTHFMQIKTMKSMLSLPEG---------- 465
lldnythkilllsllmtAADLSnpTKpwslskRwAelimeEFFeQGDlEr
+d k ++l+l+++A+D+S+p+Kpw l+ Rw+e + eEFF+QGDlE+
T04D3.3 466 -ID----KNKALCLIVHACDISHPAKPWNLHERWTEGVLEEFFRQGDLEA 510
elGldrpspmcDRtsAayvpksQvgFidfIvePv<-*
+Gl+ sp+cDR++ v+ sQ+gFidfIveP+
T04D3.3 511 SMGLP-YSPLCDRHT-VHVADSQIGFIDFIVEPT 542