Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T04G9.2
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Query: T04G9.2 CE04883 zinc metalloprotease status:Partially_confirmed SW:P55115 protein_id:AAA82461.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Astacin Astacin (Peptidase family M12A) 395.0 5.7e-122 1
ShTK ShTK domain 113.3 1.6e-32 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Astacin 1/1 171 358 .. 1 200 [] 395.0 5.7e-122
ShTK 1/3 403 439 .. 1 44 [] 40.2 1.5e-10
ShTK 2/3 486 522 .. 1 44 [] 44.8 6.1e-12
ShTK 3/3 585 621 .] 1 43 [. 44.1 1e-11
Alignments of top-scoring domains:
Astacin: domain 1 of 1, from 171 to 358: score 395.0, E = 5.7e-122
*->rrWpngsGiVvIPYvisssysgrersliraAmrhwenkTCirFvprt
++Wp+g +IPY+iss+ys+++rsli+a m+++ +TCir+vp++
T04G9.2 171 QLWPEG----RIPYTISSQYSSYSRSLIAASMQEYASHTCIRWVPKE 213
sagendylrffsgdGCwSyVGrrggGaeQevSlganGCdyfGtivHElgH
a +++y++++++ GC+S+VG++ gG+ Q++Slg +GC+++G+i HEl+H
T04G9.2 214 -AADVNYVHIYPDRGCYSMVGKM-GGK-QSLSLG-SGCIQKGIILHELMH 259
ALGFwHEQsRpDRDdyVsInwqNIdpgqeynFdKydpdqvdslGvPYDYg
A+GF+HEQsR+DRDd+++I+w+NI+ g++++F+Ky + +++slG+ YDYg
T04G9.2 260 AVGFFHEQSRTDRDDHITIMWNNIQAGMQGQFEKYGHGTIQSLGTGYDYG 309
SiMHYgpyaFSkngskpTIvpkdnkvyqatiGQReglSflDikkiNklYn
SiMHYg++aFS+ng pT++pk+n atiGQR+g+S++D kiN+lY+
T04G9.2 310 SIMHYGTKAFSRNG-QPTMIPKKN---GATIGQRNGFSKVDKFKINTLYG 355
Cpe<-*
Cp+
T04G9.2 356 CPV 358
ShTK: domain 1 of 3, from 403 to 439: score 40.2, E = 1.5e-10
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ + + dC ++a++G +C ++p +m++nCp +CG+C
T04G9.2 403 ECR---NLRGDCDDLAKQG-WCIRNP---GWMRANCPISCGMCI 439
ShTK: domain 2 of 3, from 486 to 522: score 44.8, E = 6.1e-12
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ D ++dC ++s+ + C+ ++ +fmk++C+k+CGfC
T04G9.2 486 DCE---DLRVDCLVLVSQRY-CKISQ---NFMKSYCAKSCGFCF 522
ShTK: domain 3 of 3, from 585 to 621: score 44.1, E = 1e-11
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfC<-*
+C D+ + C++w+s+G+ C+ + +++mk+nCp +CG+C
T04G9.2 585 ECS---DRKHFCSHWKSAGF-CEGIF--MNYMKKNCPASCGLC 621