hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T05C1.6
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Query:  T05C1.6  CE02864    status:Partially_confirmed TR:Q22222 protein_id:AAA68394.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
CG-1     CG-1 domain                                    271.1    2.3e-80   1
TIG      IPT/TIG domain                                  44.2    2.7e-10   1
ank      Ankyrin repeat                                  22.7    0.00011   1
Filamin  Filamin/ABP280 repeat                            4.8        3.8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CG-1       1/1      72   195 ..     1   126 []   271.1  2.3e-80
TIG        1/1     415   498 ..     1   105 []    44.2  2.7e-10
ank        1/1     616   649 ..     1    33 []    22.7  0.00011
Filamin    1/1     765   774 ..    91   100 .]     4.8      3.8

Alignments of top-scoring domains:
CG-1: domain 1 of 1, from 72 to 195: score 271.1, E = 2.3e-80
                   *->iqtlLpeaksRWLrpeEilaiLinanaekkeecltvssktRpqsGsl
                      +++l+p++k++W+++eEil+i+++ana++k++c+tv+s++Rp+s+s+
     T05C1.6    72    AVELFPCFKDKWNTKEEILNIILAANADPKSNCVTVQSSPRPCSSSQ 118

                   fLFdRKvLryFRKDGHnWkKKKDGKTikEAHerLKVgsvevlhcyYaHGe
                   f+++R++++++++DG++WkK+++GK+++E+H++LK++++++++++Y+H++
     T05C1.6   119 FIYPRLDNAWYKNDGYIWKKRTNGKQNREDHLNLKISGHPHISAKYIHSA 168

                   dnptFqRRsYWLLdeelehIVLVHYleVk<-*
                   ++ptF+RRsY+++d++  ++VLVHYl+Vk
     T05C1.6   169 IVPTFHRRSYSVPDSD--CHVLVHYLNVK    195

TIG: domain 1 of 1, from 415 to 498: score 44.2, E = 2.7e-10
                   *->PvItsisPssgplsGGteiTitGsnlgsgsrPrirkntfededikVt
                      P+I+ + Pss++l+GG+++ + G +  +g            + +k++
     T05C1.6   415    PIIE-MTPSSSSLKGGQKMLVVGGYYRKG------------HEYKIS 448

                   fggtpvpCdvissssstqivCktPpva.pgpsppvvtvsvdgggsgdgrs
                   fg    ++  +  ++   + C++Pp+a+p +++  ++v  +g+      +
     T05C1.6   449 FGRGR-MMPAVLIHA-GVLSCVIPPSAkPEVVQ--IRVFCNGQA-----I 489

                   sspvtFtYv<-*
                   s+ + FtY+
     T05C1.6   490 STASEFTYE    498

ank: domain 1 of 1, from 616 to 649: score 22.7, E = 0.00011
                   *->dGnTPLHlAakrgnlevvklLlq.rGAdlnaqdd<-*
                      dG+TPLH A+k+   ++++l+++   + ++++dd
     T05C1.6   616    DGSTPLHTACKNSASRIARLIISiDSSAIDVVDD    649

Filamin: domain 1 of 1, from 765 to 774: score 4.8, E = 3.8
                   *->GqhiPgSPfk<-*
                      ++h+P+SP++
     T05C1.6   765    DVHVPDSPKM    774

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