hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T05C12.7
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Query:  T05C12.7  CE02319  locus:cct-1 T-complex protein status:Confirmed SW:P41988 protein_id:CAA91308.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
cpn60_TCP1 TCP-1/cpn60 chaperonin family                590.7   9.1e-174   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
cpn60_TCP1   1/1      32   538 ..     1   533 []   590.7 9.1e-174

Alignments of top-scoring domains:
cpn60_TCP1: domain 1 of 1, from 32 to 538: score 590.7, E = 9.1e-174
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      +a+ivk++LGP G++Kmlv++  Gd+++TnDGaTIlk +e++hP
    T05C12.7    32    IANIVKSSLGPVGLDKMLVDDV-GDVIVTNDGATILKQLEVEHP--- 74

                   lgAkllveaskkQddevGDGTTtvvvLageLLkeaekLinaGlhPtqIir
                    + k+lve+++ Qd+evGDGTT+vv+ a+eLLk+a +L+++++hPt Ii+
    T05C12.7    75 -AGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIIN 123

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   Gy+lA+++a++++ +  + ++++  i +  ++++Akts++sK+i+ + ++
    T05C12.7   124 GYRLACKEAVKYISENISFTSDS--IGRQSVVNAAKTSMSSKIIGPDADF 171

                   dAlakvgvdavitveeekndk.ysfdldnievvkglGgsifdsglisGyv
                     +++++vda  +v  e+n+k + ++++ ++v+k +G+s  +s l++Gy+
    T05C12.7   172 --FGELVVDAAEAVRVENNGKvT-YPINAVNVLKAHGKSARESVLVKGYA 218

                   itkeerhpvelempkrlendaKIavlncpLeiLelktetkkrplviiasd
                   +++++  +   +mp+r++n aKIa+l+++L     k++++   +v ++++
    T05C12.7   219 LNCTVASQ---AMPLRVQN-AKIACLDFSLM--KAKMHLG--ISVVVEDP 260

                   edleaLstlEenklkgkvkviavkgpnvvitqkegidDiAlhtladtvis
                   ++lea++++E +  k+++++i ++g+nvv+t + gidD++l  +
    T05C12.7   261 AKLEAIRREEFDITKRRIDKILKAGANVVLTTG-GIDDLCLKQFV----- 304

                   dkagIlalrrvskedlgrlakvlgakvvttligpgagse.deeeiGerde
                    + g++a+rr++k+dl+r+ak++ga+ + +l ++++++  d++ +G++de
    T05C12.7   305 -ESGAMAVRRCKKSDLKRIAKATGATLTVSLATLEGDEAfDASLLGHADE 353

                   vleeeigestsddkktkleerkarLsgkvatIllRGateveldElerrie
                   +++e+i +    d++  +++ k+     + +I+lRGa++v+ldE+er+++
    T05C12.7   354 IVQERISD----DELILIKGPKS---RTASSIILRGANDVMLDEMERSVH 396

                   DAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlaveafa
                   D+l++v++++e++++V+GGGa+E  l++ L+ y a++l+++eqlav +fa
    T05C12.7   397 DSLCVVRRVLESKKLVAGGGAVETSLSLFLETY-AQTLSSREQLAVAEFA 445

                   kALeviPkiLAeNAGldgidviskLraehakGn.s....DlknyGidaat
                   +AL++iPk+LA NA +d++d+++kLra h k +  ++ + lk+ G+d ++
    T05C12.7   446 SALLIIPKVLASNAARDSTDLVTKLRAYHSKAQlIpqlqHLKWAGLDLEE 495

                   gkivdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                   g+i d++eaGI++p+  k ++lk+AteaA++iL+iDd+I+  +
    T05C12.7   496 GTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLIKLDK    538

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