Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05C12.10
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Query: T05C12.10 CE02313 hedgehog-like protein status:Partially_confirmed TR:Q21535 protein_id:CAA90265.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Hint Hint module 106.9 3e-32 2
Keratin Keratin 0.7 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Keratin 1/1 91 112 .. 1 22 [. 0.7 8.8
Hint 1/2 379 822 .. 210 239 .] -63.7 5.9e+04
Hint 2/2 940 1122 .. 1 189 [. 140.6 1e-42
Alignments of top-scoring domains:
Keratin: domain 1 of 1, from 91 to 112: score 0.7, E = 8.8
*->SCydlClPtccvcgPtPLAdSC<-*
C++l P + + Pt + + C
T05C12.10 91 TCCNLFNPRSHHSIPTHIGNDC 112
Hint: domain 1 of 2, from 379 to 822: score -63.7, E = 5.9e+04
*->gpqdss.........................................
+++++s+ +++ ++++ ++++++++++++++++++++++++++++++
T05C12.10 379 QTGNESglggsagtdkaggkkgghgdsgdsgnnknkdngkgkgkgkn 425
..................................................
++++++++++++++++++++++++++ +++++++++++++++++++++++
T05C12.10 426 deedeedngdedgngkggnggnpkgewddgdgdedddgtdggskesgnng 475
..................................................
+++++++++++++++++++++++++++++ + + +++++++ +++++++
T05C12.10 476 kgkgkgsgdgdgnrngngdgngrpkgdgnikinihspddndllekdengp 525
..................................................
+++++ +++++++++++++++++++++++++++++++ ++++++++++++
T05C12.10 526 ngkggagngngdgdkdnngkgngtgdgdgdgngngngltgdgngtgdgdn 575
..................................................
++++++++++++++++ + +++++++++++++++++++++++++++++++
T05C12.10 576 nesgngngdgsdknsgagagtkpenreggdgngngtgdgngdgndngngs 625
..................................................
++ ++++++++++++++++++++++++++ ++++++++++++++++++++
T05C12.10 626 kglgtgsgdgkgegnksgtpgksdgkedgagsngsgngkegdgnksggsg 675
..................................................
+++ ++++++++++++++++++++++++++++++++++++++++++ ++
T05C12.10 676 kggagngksgdgsgdgknngnggtgdgkdkngkgsgsgdndksgtraagk 725
..................................................
++ +++++++++++++++++++++ ++++++++++++++ ++++++++++
T05C12.10 726 gnaegngkgngndgkgsgsgdgsgaggkgdksdsesgneadgkdgkkneg 775
.......................aatqqeGvHWYsnlLYglgtllld<-*
+++ ++++ ++++++++++++ ++ +v ++ +++l++ll
T05C12.10 776 aggeaaagsggankggsdgddddVDVTDVEVGTKPLTGTKLEELLAK 822
Hint: domain 2 of 2, from 940 to 1122: score 140.6, E = 1e-42
*->AenSvAAkllaplGvqsGG...CFPGdAtVtledGgrKplkdLkpGD
+++ +A++ +++G++ GG+++CF++d++Vt+ +G K++++L++GD
T05C12.10 940 QAAVLADT-PGAAGAAGGGrsnCFSADSLVTTVTGQ-KRMDELQIGD 984
rVLAaDeagGrlv.ySdvLlFLDRepeqravFyvIeTedgpekltLTpaH
+VL ++ G++++y +v +F +Rep++r +F+v+ T g +kl+LT +H
T05C12.10 985 YVL-VPSS-GNVLkYEKVEMFYHREPKTRTNFVVLYTKSG-RKLSLTGRH 1031
LlFvadcsvnkstPeyikS.sg...smgpagfravFAsrvrpGdcvlvad
Ll va+cs+++ +y ++g + +m +++ +A+++r G+cvl d
T05C12.10 1032 LLPVAECSQVE---QYTMNpDGidvAM----RESKYAEKARKGECVLSID 1074
kekggklrpvkVvrvsreeatGiYAPLTahGTivVndVlASCYAvIeshs
+ +g++++ +vrv+r +++GiY+P+T +G ++V+ Vl SC++ +eshs
T05C12.10 1075 E--SGEVIADEIVRVGRMTNVGIYSPMTVEGSLIVDGVLSSCFSHLESHS 1122
<-*
T05C12.10 - -