Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05C12.6a
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Query: T05C12.6a CE02318 locus:mig-5 presynaptic density protein (PSD-95) repeat-like domain status:Partially_confirmed TR:Q22227 protein_id:CA
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DIX DIX domain 174.4 1.9e-48 1
DEP Domain found in Dishevelled, Egl-10, and P 115.8 8.4e-31 1
PDZ PDZ domain (Also known as DHR or GLGF) 47.4 5e-12 1
Mur_ligase Mur ligase family, catalytic domain 3.2 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DIX 1/1 9 92 .. 1 87 [] 174.4 1.9e-48
Mur_ligase 1/1 232 266 .. 1 37 [. 3.2 5.3
PDZ 1/1 226 308 .. 1 84 [] 47.4 5e-12
DEP 1/1 427 501 .. 1 82 [] 115.8 8.4e-31
Alignments of top-scoring domains:
DIX: domain 1 of 1, from 9 to 92: score 174.4, E = 1.9e-48
*->csetKViYhLDdEetPYlvkvpvpaervTLgdFKevLtkrngsYKYy
cs++KV+Y+LDdE+tPY+++++++++++TLg+FK+++tkr +YKYy
T05C12.6a 9 CSQIKVFYYLDDETTPYVSVIEAREGVATLGNFKNSFTKR--GYKYY 53
fKslDpDfdCgvVKeEirdDsarLrPcfNgrvvswLvsve<-*
+K+lDpD++ ++VK+E+++Ds+rLr+++Ng+++++Lvs++
T05C12.6a 54 AKELDPDIQ-REVKVELTTDSDRLRKSQNGFYEIFLVSTP 92
Mur_ligase: domain 1 of 1, from 232 to 266: score 3.2, E = 5.3
*->kgtlflglkgekidgshgieqldasragalvvkspai<-*
k+ +lgl +++idg+ ++++++ ++ga++ ++++
T05C12.6a 232 KNVPYLGLSVCTIDGHIFVSEIA--PEGAVEKDGRVN 266
PDZ: domain 1 of 1, from 226 to 308: score 47.4, E = 5e-12
*->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
e+ l++ +lG+s+ + +i+vse+ p ga e++Gr ++GD
T05C12.6a 226 EIYLPMK-NVPYLGLSVCTIDG-HIFVSEIAPE-GAVEKDGRVNVGD 269
vIlsvNGqdvenmsheravlaikgsgg..sevtLtvlRd<-*
+Il+vN +++e +s +av ++++ ++++++tL +
T05C12.6a 270 QILQVNRVSFEELSGPQAVRSLREAASskRPITLYISKF 308
DEP: domain 1 of 1, from 427 to 501: score 115.8, E = 8.4e-31
*->pesgvklkdrkwllkvipncFtGselVdWLmdnlsgvidrkeAlhla
p+sg+ +k+rkwl++++p++F+G++lVdWL+d++ ++++rk+A+ +a
T05C12.6a 427 PDSGLAVKNRKWLKILVPMSFIGRDLVDWLVDHMADIHNRKKARIYA 473
qlLlkeGyirhvgdhltgkndhtFldkqtyYrfpd<-*
++Ll+ G+irhv ++++tF++ +yY+f+d
T05C12.6a 474 ARLLAAGLIRHV------VSKLTFTE-KCYYVFGD 501