Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T05E12.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  T05E12.3  CE23948    status:Partially_confirmed TR:Q9XUR6 protein_id:CAB04686.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
K_tetra  K+ channel tetramerisation domain               72.0    2.8e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
K_tetra    1/1      20   112 ..     1   106 [.    72.0  2.8e-19

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 20 to 112: score 72.0, E = 2.8e-19
                   *->ErvrLNVGGkrFeTsksTLtrfkpdTlLgrllktdsdvhearlrlcd
                      + ++L VGG+ F Ts +TL    +++ L++ +         r +l
    T05E12.3    20    QEIKLYVGGTEFTTSIKTLL--NTESALKNYVV--------RYELKT 56

                   fyddetgEyFFDRsPkhFetILnfYRtGdGkLhrpevcldsfleEleFyg
                     ++e   + +DRsPkhF+tILnf+R+Gd+ L++ e+ l ++ +E+eF++
    T05E12.3    57 ERTPEL--ITIDRSPKHFDTILNFLRDGDVPLPVNELVLAEVRQEAEFFR 104

                   ldelaiesC<-*
                   l++l i +C
    T05E12.3   105 LNGL-IQLC    112



[DB home][top]