Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05E12.3
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Query: T05E12.3 CE23948 status:Partially_confirmed TR:Q9XUR6 protein_id:CAB04686.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
K_tetra K+ channel tetramerisation domain 72.0 2.8e-19 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
K_tetra 1/1 20 112 .. 1 106 [. 72.0 2.8e-19
Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 20 to 112: score 72.0, E = 2.8e-19
*->ErvrLNVGGkrFeTsksTLtrfkpdTlLgrllktdsdvhearlrlcd
+ ++L VGG+ F Ts +TL +++ L++ + r +l
T05E12.3 20 QEIKLYVGGTEFTTSIKTLL--NTESALKNYVV--------RYELKT 56
fyddetgEyFFDRsPkhFetILnfYRtGdGkLhrpevcldsfleEleFyg
++e + +DRsPkhF+tILnf+R+Gd+ L++ e+ l ++ +E+eF++
T05E12.3 57 ERTPEL--ITIDRSPKHFDTILNFLRDGDVPLPVNELVLAEVRQEAEFFR 104
ldelaiesC<-*
l++l i +C
T05E12.3 105 LNGL-IQLC 112