Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05G5.3
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Query: T05G5.3 CE00315 locus:cdk-1 serine\/threonine kinase (CDC2\/CDKX subfamily) status:Confirmed SW:P34556 protein_id:CAA81590.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 325.6 5.8e-94 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 22 312 .. 1 294 [] 325.6 5.8e-94
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 22 to 312: score 325.6, E = 5.8e-94
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek...r
+++lek+GeG++G+Vyk+k++ t+ VA+K+++ es++e +++
T05G5.3 22 FTKLEKIGEGTYGVVYKGKNR-RTNAMVAMKKIR--LESEDEGvpsT 65
flrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrng
+ rEi++lk+L+HpN+v l v + +++l l++E++ dL++y+ + g
T05G5.3 66 AVREISLLKELQHPNVVGLEAVIM-QENRLFLIFEFLSF-DLKRYMDQLG 113
..gplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKi
++ +l+ + +k+++ Qil+++ ++H ++++HRDLKp+N+L+d+n g +K+
T05G5.3 114 kdEYLPLETLKSYTFQILQAMCFCHQRRVIHRDLKPQNLLVDNN-GAIKL 162
aDFGLArlle.sssklttfvGTpwYmmAPEvileg.rgysskvDvWSlGv
aDFGLAr + + +t+ v T+wY+ APE+ l+g + ys vD+WS+G+
T05G5.3 163 ADFGLARAIGiPIRVYTHEVVTLWYR-APEI-LMGaQRYSMGVDMWSIGC 210
iLyElltggplfpgadlpaftggd.evdqli.if.vlklPfsdelpktri
i++E++t++plf+ gd+e+d+l++if+vl++P++ e+
T05G5.3 211 IFAEMATKKPLFQ---------GDsEIDELFrIFrVLGTPTELEW----- 246
dpleelfriikrp............glrlplpsncSeelkdLlkkcLnkD
++ e l + + ++++ +++ +++ ++ +++ +++ +Ll+++L +D
T05G5.3 247 NGVESLPDYKATFpkwrenflrdkfYDKKTGKHLLDDTAFSLLEGLLIYD 296
PskRpGsatakeilnhpwf<-*
Ps R+ +ak +l hp+f
T05G5.3 297 PSLRL---NAKKALVHPYF 312