hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T05G5.8
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Query:  T05G5.8  CE21152    status:Partially_confirmed SW:P34561 protein_id:CAA81595.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Vps53_N  Vps53-like, N-terminal                         739.6   1.4e-218   1
filament Intermediate filament protein                    5.4          2   1
PAZ      PAZ domain                                       3.7          8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
filament   1/1      59   106 ..   276   323 ..     5.4        2
PAZ        1/1      92   127 ..     1    36 [.     3.7        8
Vps53_N    1/1      29   391 ..     1   421 []   739.6 1.4e-218

Alignments of top-scoring domains:
filament: domain 1 of 1, from 59 to 106: score 5.4, E = 2
                   *->eiELqslksqnasLErqlaElEeryeaelaqyqalisqlEeeLqqlr
                      e E+ +l +  a L  + a++ er+e++l+++q+++ +lE  +  +r
     T05G5.8    59    EGEIGELDNELAYLVETNANVSERGEEALKHAQDAMIELEKSIGSIR 105

                   e<-*
                   e
     T05G5.8   106 E    106

PAZ: domain 1 of 1, from 92 to 127: score 3.7, E = 8
                   *->lpvlelledyltertsiklsdrdrkkvkealkGlkV<-*
                      + ++el++++ + r++ k sd+  + +++++k l++
     T05G5.8    92    DAMIELEKSIGSIRERTKSSDEIVREMTRDIKQLDI    127

Vps53_N: domain 1 of 1, from 29 to 391: score 739.6, E = 1.4e-218
                   *->kpdfsaleyInqLFPteqSLaniDeliqkirgeirrlDdnIlavvrt
                      kp++s++++In+LFPteqSL+++D++i++++gei++lD++++++v+t
     T05G5.8    29    KPNMSLMAQINELFPTEQSLTQLDSIIASVEGEIGELDNELAYLVET 75

                   qtNvgqdgkEaladaqsaieeLfqkiqeiksvAesTeemVkeiTrDIKqL
                   ++Nv+++g+Eal++aq+a++eL+++i++i+++++s++e+V+e+TrDIKqL
     T05G5.8    76 NANVSERGEEALKHAQDAMIELEKSIGSIRERTKSSDEIVREMTRDIKQL 125

                   DfAKkNLTtSiTtLnrLhMLvtsgvesLnaLlskrsYgeiaslLqAilql
                   D+AK+NLT+SiTtL++Lh+L+t gvesL+a+++k++Y++ia++L+Ail++
     T05G5.8   126 DIAKRNLTASITTLHHLHILLT-GVESLGAWVDKKDYSSIARQLPAILNV 174

                   lehFkkYksvdeIanLsesidklkksllsqifkdFkeaFsKpsgqetgel
                   l++F++Yk++d+IanLs+++dklk+sl++q++kd+k+aF      +tg+l
     T05G5.8   175 LQLFDAYKESDQIANLSGQLDKLKASLTIQLAKDLKNAF------QTGQL 218

                   gsllqkLsDaCrVvdiLdpsvkeelIkwFisqqLeeYeqiFreNeEaawL
                   +   ++++D+CrV+++L+++vke+++kwFi+qqL+eY++i+++NeE+awL
     T05G5.8   219 S---DRITDMCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWL 265

                   DkidrRYaWfKrlLrdfeekykpniFPadWhvaeRLtveFChvTRkdLak
                   Dk+d+RY+Wf+r+L+dfe+++++niFPadWh+++RLt+eFC+vTR++L++
     T05G5.8   266 DKVDDRYKWFVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYR 315

                   ILkrrkKDkeldvklLllALqsTleFEkfLdkRFsgktltddieddiEig
                   I++rr+  ++ld+klL++A+q+T++FE++L+kRF++k+
     T05G5.8   316 IMTRRR--QDLDWKLLGHAIQHTKMFEALLTKRFPEKD------------ 351

                   rpndNsqvlaEPtkemEelatkGdvkepkKpkakefnfrgaiSSCFEPHL
                                                     +++f++ai+S+F+++L
     T05G5.8   352 ----------------------------------GISFEKAIWSVFDTFL 367

                   tlYIesqekeLselldkfvseekt<-*
                   +++I++qek+L+e+ld+++s++++
     T05G5.8   368 DVFINAQEKTLNEFLDTCASKIRS    391

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