Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05H10.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T05H10.1 CE13299 ubiquitin carboxyl-terminal hydrolase status:Partially_confirmed TR:Q22240 protein_id:CAA87795.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UCH Ubiquitin carboxyl-terminal hydrolase 387.9 8.5e-135 1
DUF153 MTH1175-like domain (DUF153/COG1433) 6.6 1.5 1
MtrG Tetrahydromethanopterin S-methyltransferase, 4.8 6.8 1
FliM Flagellar motor switch protein FliM 3.3 8.6 1
DUF164 Uncharacterized ACR, COG1579 2.9 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF153 1/1 204 225 .. 81 103 .] 6.6 1.5
UCH 1/1 120 438 .. 97 456 .] 387.9 8.5e-135
FliM 1/1 1038 1061 .. 115 138 .. 3.3 8.6
MtrG 1/1 1207 1221 .. 19 33 .. 4.8 6.8
DUF164 1/1 1240 1247 .. 228 235 .] 2.9 7.5
Alignments of top-scoring domains:
DUF153: domain 1 of 1, from 204 to 225: score 6.6, E = 1.5
*->IkpvkvrPaagdtieealealqe<-*
+kp+ + +a+ ++eeal a+++
T05H10.1 204 VKPFGAI-HAYKSVEEALTAFVQ 225
UCH: domain 1 of 1, from 120 to 438: score 387.9, E = 8.5e-135
*->e.esisPtqflktlgkinpsFselegykliqQqDAqEfllfLLdgLh
e++s +++++++++g+ + + +y+ Q+D+qE+++ ++d+L+
T05H10.1 120 EnDSLETKDLTQSFGWTSNE-----AYD---QHDVQELCRLMFDALE 158
EDlNrvakkpyneehepgldlaleeeeadelkdseaseeawknkstrnes
+k+k t++e+
T05H10.1 159 ----------------------------------------HKWKGTEHEK 168
lisdlFqGqlesrikCaleCgkvsvtyepFldLslpikpkeasdspksLe
li+dl++G++e+ + C l+Cg++sv+ ++FldL+l++kp++a+ ++ks+e
T05H10.1 169 LIQDLYRGTMEDFVAC-LKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVE 217
ecLkaFtkeEiLKviegenkyyCdkcgkkqeasKklkisrLPpiLtihLk
e+L aF+++E+L +g+n+y C++c++kq+a+K+l+i+++P Lti+Lk
T05H10.1 218 EALTAFVQPELL---DGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLK 264
RFsydgetssnimKindrvefPleeLDlspyln...............q.
RF++d++t+++i K+nd+++fP+ LDl++y+n+++++++++ ++ +++
T05H10.1 265 RFDFDYNTMHRI-KLNDKMTFPDV-LDLNDYVNkekrsttssawqqigKn 312
k.tnkeraa.aean.sl.eee.qqsvnade.gn.nq.ee.seestksqee
k++n+e++++ ++ ++++++ ++qs+n+++++++++ +++ + + +++
T05H10.1 313 KsENEEDDMeLGSPnPKrCTPgVQSPNRYQgSEnVCvGQpIDHAAVDDIV 362
genpptkYeLvaVvvHsGsslsgGHYiayikkldnnkWykFDDs.vetVg
++++ +YeL++V+vHsG ++ gGHY+ayik+ld ++Wy F+D++v+
T05H10.1 363 KTSGDNVYELFSVMVHSG-NAAGGHYFAYIKNLDQDRWYVFNDTrVDFA- 410
dwkvvsvvseeevlkesgggtatseskrlkryrwAYiLFY<-*
++ + e+ + +g+++s+++ AY+L+Y
T05H10.1 411 -----TPLEIEKSFGGHPSGWNQSNTN-------AYMLMY 438
FliM: domain 1 of 1, from 1038 to 1061: score 3.3, E = 8.6
*->rviqrllkrvLenyKEAWspvvdl<-*
+ +q +l +Len++E W+p+ +l
T05H10.1 1038 KMMQIILFDILENLRENWKPLFEL 1061
MtrG: domain 1 of 1, from 1207 to 1221: score 4.8, E = 6.8
*->vkkRLDeIEeKvEFv<-*
+k+RLD +E Kv F+
T05H10.1 1207 LKSRLDMLENKVNFT 1221
DUF164: domain 1 of 1, from 1240 to 1247: score 2.9, E = 7.5
*->SRILYyee<-*
SR LYy++
T05H10.1 1240 SRVLYYKD 1247