Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05H10.2
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Query: T05H10.2 CE28953 locus:apn-1 AP endonuclease (family 2) status:Partially_confirmed SW:Q10002 protein_id:CAA87789.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
AP_endonuc_2 AP endonuclease family 2 337.4 1.6e-97 1
SpoVG SpoVG 3.8 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SpoVG 1/1 33 51 .. 72 90 .] 3.8 4.2
AP_endonuc_2 1/1 120 355 .. 1 271 [] 337.4 1.6e-97
Alignments of top-scoring domains:
SpoVG: domain 1 of 1, from 33 to 51: score 3.8, E = 4.2
*->RkkIQdAvLkeYervkete<-*
R+kIQ + k +++ke+e
T05H10.2 33 RGKIQKHIQKTLQKMKEEE 51
AP_endonuc_2: domain 1 of 1, from 120 to 355: score 337.4, E = 1.6e-97
*->igahvslsggeeslenaleraaeiGfdaveiflknpvrlwksprled
+g hvs++gg le a+++a++ G++++++f++n+ r w+ +++++
T05H10.2 120 LGFHVSAAGG---LEQAIYNARAEGCRSFAMFVRNQ-RTWNHKPMSE 162
eeaekfkealkelgisldselvvHaPYlliNlaslapndevrreksirvl
e+ e +++a++e+++ l ++v+H++Y l N +s p+ e+ eks+ ++
T05H10.2 163 EVVENWWKAVRETNFPL-DQIVPHGSY-LMNAGS--PEAEKL-EKSRLAM 207
kdeieraeklGakvvvfHpGsvpalkpgkaskeealkrvlralneliekl
+de++raeklG++ ++fHpGs+ +gk++kee++ ++++ ++ ++
T05H10.2 208 LDECQRAEKLGITMYNFHPGST----VGKCEKEECMTTIAETIDFVV--- 250
raktkgVkialEnmpcsfmagqgnelGystfeveelkeiidlvddksdrv
+kt++++++lE+ magqgn++G +tfe elk iid+v+ k +rv
T05H10.2 251 -EKTENIILVLET-----MAGQGNSIG-GTFE--ELKFIIDKVKVK-SRV 290
gvclDtcHafaagydGlfkdflietiedfgdfleefddllGleylkhmai
gvc+DtcH+fa gyd i+t +++++++++f +++G++ylk ai
T05H10.2 291 GVCIDTCHIFAGGYD-------IRTQKAYEEVMKNFGEVVGWNYLK--AI 331
HlndskydlggekDrHlpiGeGtI<-*
H+ndsk+d+g++ DrH++iG G+I
T05H10.2 332 HINDSKGDVGSKLDRHEHIGQGKI 355