Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05H10.5b
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Query: T05H10.5b CE28868 status:Partially_confirmed TR:Q95QB5 protein_id:CAC70105.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
U-box U-box domain 156.5 4.9e-53 1
Pox_A_type_inc Viral A-type inclusion protein repeat 8.0 1.6 1
FTCD_C Formiminotransferase-cyclodeaminase 6.0 2.1 1
DUF259 Protein of unknown function, DUF259 3.1 4.1 1
FHIPEP FHIPEP family 1.5 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF259 1/1 328 339 .. 1 12 [. 3.1 4.1
Pox_A_type_inc 1/1 472 490 .. 1 19 [. 8.0 1.6
FTCD_C 1/1 882 901 .. 200 219 .] 6.0 2.1
FHIPEP 1/1 957 968 .. 677 688 .] 1.5 7
U-box 1/1 909 982 .. 1 81 [] 156.5 4.9e-53
Alignments of top-scoring domains:
DUF259: domain 1 of 1, from 328 to 339: score 3.1, E = 4.1
*->adamRamLDqLM<-*
+d +R mL qLM
T05H10.5b 328 MDPIRTMLHQLM 339
Pox_A_type_inc: domain 1 of 1, from 472 to 490: score 8.0, E = 1.6
*->rEldrlRrrIsdLekqLsd<-*
r+l++l+ +I+ L+++L++
T05H10.5b 472 RHLKELKHKINALKEKLNT 490
FTCD_C: domain 1 of 1, from 882 to 901: score 6.0, E = 2.1
*->flenqeelaerikkklediv<-*
+le e+lae++kk e+++
T05H10.5b 882 QLESFEHLAEDVKKEYEAKA 901
FHIPEP: domain 1 of 1, from 957 to 968: score 1.5, E = 7
*->LSyqElpeeikI<-*
LS++El++++++
T05H10.5b 957 LSHNELSPDSEL 968
U-box: domain 1 of 1, from 909 to 982: score 156.5, E = 4.9e-53
*->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
D+P+EF+DPI++ +M+DPV lPSG +++DR+ IerHLls +p+
T05H10.5b 909 DVPEEFKDPIMDAIMVDPVKLPSG-HVMDRAVIERHLLS-----TPN 949
DPftGRepLthdeliPNleLKekIdafleekrea<-*
+Pf+ R+pL h+el P+ eLK+kI++++++kr++
T05H10.5b 950 NPFN-RAPLSHNELSPDSELKAKIQEWICQKRNS 982