Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05H4.14
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Query: T05H4.14 CE13295 status:Partially_confirmed TR:O16519 protein_id:AAB66019.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 128.1 1.2e-34 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/6 113 151 .. 1 39 [] 19.1 0.0012
WD40 2/6 160 198 .. 1 39 [] 16.3 0.0076
WD40 3/6 214 253 .. 1 39 [] 37.0 1e-08
WD40 4/6 286 308 .. 16 39 .] 19.6 0.00091
WD40 5/6 315 353 .. 1 39 [] 28.9 2e-06
WD40 6/6 408 446 .. 1 39 [] 7.2 3.1
Alignments of top-scoring domains:
WD40: domain 1 of 6, from 113 to 151: score 19.1, E = 0.0012
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
c a +++ t +++++++ p+ g ++asg+ D +kl+d
T05H4.14 113 AACEAKIsHGTQAISALRVEPP-GVRFASGGLDYYVKLFD 151
WD40: domain 2 of 6, from 160 to 198: score 16.3, E = 0.0076
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ + l++ ++ ++++afsp+ g++l+ +S i+l d
T05H4.14 160 RYDKELLpAESHVINSLAFSPN-GETLVVASGEAIIRLLD 198
WD40: domain 3 of 6, from 214 to 253: score 37.0, E = 1e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
l + +gHt++v+cv f+p + + ++s+S+Dg+++lW+
T05H4.14 214 IIDLNITkGHTATVNCVEFNPLNKNEFISCSDDGSLRLWN 253
WD40: domain 4 of 6, from 286 to 308: score 19.6, E = 0.00091
*->vafspdsgpylasgSrDgtiklWd<-*
+ fspd g+++a g++Dg++ W+
T05H4.14 286 CTFSPD-GKWIAAGCDDGSVQAWK 308
WD40: domain 5 of 6, from 315 to 353: score 28.9, E = 2e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++H++++t++afspd +++l+s + D t+k+W+
T05H4.14 315 NVNYLVRkAHNGSITSIAFSPD-SKRLLSRGFDDTLKMWS 353
WD40: domain 6 of 6, from 408 to 446: score 7.2, E = 3.1
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++++ ++ ++ + ++p ++++ g +Dgti+++
T05H4.14 408 FDLVYKIdYPGISCHRIQWHPR-LNQIIAGLSDGTIHVYY 446