Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T06D8.2
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Query: T06D8.2 CE21155 status:Partially_confirmed TR:Q22249 protein_id:CAA88965.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UVR UvrB/uvrC motif 43.3 3.3e-11 2
Chorismate_mut Chorismate mutase 5.1 6.2 1
TFIID-18 Transcription initiation factor IID, 1 4.5 5.5 1
UPF0171 Uncharacterised protein family (UPF017 1.0 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TFIID-18 1/1 161 170 .. 1 10 [. 4.5 5.5
UVR 1/2 168 203 .. 1 36 [] 6.0 4.3
UVR 2/2 204 239 .. 1 36 [] 43.7 2.5e-11
Chorismate_mut 1/1 429 447 .. 1 19 [. 5.1 6.2
UPF0171 1/1 471 485 .. 648 662 .] 1.0 8.8
Alignments of top-scoring domains:
TFIID-18: domain 1 of 1, from 161 to 170: score 4.5, E = 5.5
*->hlFrkeLqsM<-*
h+++keLq M
T06D8.2 161 HKYSKELQAM 170
UVR: domain 1 of 2, from 168 to 203: score 6.0, E = 4.3
*->ekeikeLekeMeeAaenldFEkAAeLRDeIqaLkeq<-*
+++i ++e+ ++ A++n+dF +A + +++Lk+
T06D8.2 168 QAMIGAIERNKQTAVANEDFKLAKSAQLAVRDLKKS 203
UVR: domain 2 of 2, from 204 to 239: score 43.7, E = 2.5e-11
*->ekeikeLekeMeeAaenldFEkAAeLRDeIqaLkeq<-*
ke++eLe+++ eA++++dF++A L DeI+aL+++
T06D8.2 204 TKEMEELENDKGEAVADEDFQRANDLQDEITALRSN 239
Chorismate_mut: domain 1 of 1, from 429 to 447: score 5.1, E = 6.2
*->lsekapgeledlRakidel<-*
e+++++ e++R+kid+l
T06D8.2 429 HFENRKEGIEEIREKIDSL 447
UPF0171: domain 1 of 1, from 471 to 485: score 1.0, E = 8.8
*->lldkFrdVlvvfese<-*
l+ ++dVl+ +++
T06D8.2 471 LFTVYKDVLLLWHHF 485