hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T06D8.5
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Query:  T06D8.5  CE02326   YER141W status:Partially_confirmed TR:Q22251 protein_id:CAA88968.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
COX15-CtaA      Cytochrome oxidase assembly protein     217.6    4.5e-62   2
tubulin-binding Tau and MAP protein, tubulin-binding      6.2        3.5   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
COX15-CtaA        1/2      46   222 ..     6   188 ..   137.7  5.7e-39
tubulin-binding   1/1     226   250 ..     1    26 [.     6.2      3.5
COX15-CtaA        2/2     256   391 ..   231   382 .]    80.5    2e-22

Alignments of top-scoring domains:
COX15-CtaA: domain 1 of 2, from 46 to 222: score 137.7, E = 5.7e-39
                   *->kvsrwikrlvlitvilvlllmvvGgivRvTgSGLgCpRdWPlChGGq
                      k+ + i  ++++  ++ ++ +++Gg++R+T+SGL+ +  W l
     T06D8.5    46    KSRKRIGWWLMGCAGMCYGAVALGGVTRLTESGLSMV-NWDLFRT-M 90

                   lpPfqqkeWevEfikykeaPEykllNy..dvdlaefkfqvflEwiHRllg
                    pPf qk We+Ef kyk+ PEyk   ++++ +l efkf+  +E+ HR++g
     T06D8.5    91 KPPFGQKQWEEEFEKYKAYPEYKYKSSseEMTLNEFKFIWSMEYGHRMWG 140

                   riigivvlilaflayfavvikrlkkevlkaligllillvlQallGgltVi
                   r+igiv+li+ +  yf+  + r    ++ +  +   ll+ Q+ +G+++V+
     T06D8.5   141 RAIGIVFLIPCA--YFW-ARGRFAPDMKRRMALATTLLLAQGGIGWWMVK 187

                   tgLDqeqLdarkskPsVsllrvalHLgiamillisvLi<-*
                   +gL  +   +    P Vs++r+a+HL  a+ l+  + +
     T06D8.5   188 SGL--DPSKNSSDVPRVSQYRLATHLTMAFVLYS-IFF    222

tubulin-binding: domain 1 of 1, from 226 to 250: score 6.2, E = 3.5
                   *->vqivnkklPDlkkVqSKiGSkdNikH<-*
                      +    k+  Dl+kV+SK G +   +H
     T06D8.5   226    LSHLVKPH-DLSKVRSKLGALRGMTH    250

COX15-CtaA: domain 2 of 2, from 256 to 391: score 80.5, E = 2e-22
                   *->sflraltGalvagldAslVyntlplllglfvg....srselqDelFn
                      +f +a  Ga vagldA+lVyn +p+ ++++++++  srs+
     T06D8.5   256    VFSTAIMGAFVAGLDAGLVYNSWPKFAENWIPenmlSRSPT------ 296

                   RReDkkDLWrtlalekpefvqllHrtlalllftllvlailvfalkkvkal
                            + +  e+ ++vq++Hr la+l ++ +vl    ++ ++ +
     T06D8.5   297 ---------WKNFFENDVTVQFVHRNLAYLTVI-SVLSTFLIG-RRAPIP 335

                   kailmtllavllalvtlQallGiltiylelpIallAsahqfvaacLlatl
                   k++ m+ l+   a+v +Qa+lG++t+   +p+  lA  hq +  +Ll+ +
     T06D8.5   336 KRTRMA-LNLTVAAVFGQAALGVFTLINYVPVW-LAACHQSGSMALLS-S 382

                   llfasllfR<-*
                   +l++s + R
     T06D8.5   383 VLWLSHELR    391

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