Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T06D8.8
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Query: T06D8.8 CE02329 locus:rpn-9 status:Partially_confirmed TR:Q22253 protein_id:CAA88971.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PCI PCI domain 76.5 2.1e-20 1
DUF633 Family of unknown function (DUF633) 3.4 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF633 1/1 62 108 .. 170 215 .] 3.4 7.8
PCI 1/1 271 344 .. 1 75 [] 76.5 2.1e-20
Alignments of top-scoring domains:
DUF633: domain 1 of 1, from 62 to 108: score 3.4, E = 7.8
*->lfkkKwqreleklkkilsqisea.kdseqakaklqelsekIieviee
lf++ w+ + + l+ + ++is a+ + + k+k +e+++kI vi++
T06D8.8 62 LFVAEWELRVNPLQLVEICISIAqNIATKDKQKSMEFLSKIGNVINK 108
<-*
T06D8.8 - -
PCI: domain 1 of 1, from 271 to 344: score 76.5, E = 2.1e-20
*->akhveeLrrkirelnLlqlaetyssapyssislselAellglsveev
+k+ + L kir++++++la +++ + +s+s++e+A +++++ +ev
T06D8.8 271 KKQKDFLTAKIRLMAVMELAV-SRPTKARSVSFKEIATKCQIPFDEV 316
EkllsklIldgrihakIDqvngiveves<-*
E l++k++++++i++ I+qv+++v+v++
T06D8.8 317 EFLVMKALSKDLIRGDINQVEQVVYVTW 344