Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T07C4.1
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Query: T07C4.1 CE00638 UMP synthase status:Partially_confirmed TR:Q18516 protein_id:CAA84708.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
OMPdecase Orotidine 5'-phosphate decarboxylase / H 221.9 8.1e-63 1
Pribosyltran Phosphoribosyl transferase domain 114.0 5.4e-32 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pribosyltran 1/1 41 184 .. 1 174 [] 114.0 5.4e-32
OMPdecase 1/1 264 482 .. 1 277 [] 221.9 8.1e-63
Alignments of top-scoring domains:
Pribosyltran: domain 1 of 1, from 41 to 184: score 114.0, E = 5.4e-32
*->pyffditkllippellraiarelaeiikeeg.kpdvvvGpdagGipf
p+++d+++ + +p ll +i++++ ++++ ++ ++ v+G++++++p
T07C4.1 41 PIYIDLRECFGHPGLLMLISEAISKQVEISEvQYAGVLGIPYAALPY 87
aaalAdaLgvpfvpvrKEnsagklplalirkrsyakeygtgeqesevgli
a+ A k+pl li +r++ak ygt+ +li
T07C4.1 88 ASVAAGNYL-------------KKPL-LI-VRKEAKSYGTK------KLI 116
egvgdvggdierpGkrVliVDDvidTGgTilaaaelLkeagpGakvvgva
eg++++++ r ++++Dv++TGg+il +++ L+ + + + +v+
T07C4.1 117 EGLYQPND-------RLILIEDVVTTGGSILDVVKVLHTE--NLVASDVF 157
vlvdrpeggarerlekegfpveslivld<-*
+++dr e+g+r++l+++g++++sl++++
T07C4.1 158 CILDR-EQGGRQKLQDAGVTLHSLLDMQ 184
OMPdecase: domain 1 of 1, from 264 to 482: score 221.9, E = 8.1e-63
*->pnLcvALDvptklawlddagleealieladelgpeyvdvlKvGtplf
+nLc+A D++t e++l ++++ +gp v+++K + + +
T07C4.1 264 SNLCLAVDYTTV---------EQCL-QMIELAGP-FVLAIKLHADAI 299
edfGseGttllklvaelkkhgpdfliflDlKfaDIGnTvakqaesGvgak
+df e +++kl + +++ f+if+D+Kf+D+GnT+ +q G+ +k
T07C4.1 300 TDFNEE--FTRKLTTMANDMD--FIIFEDRKFGDTGNTNLLQL-TGA-QK 343
aklgADivtvHavaGdgtlkaakeaaeelgkrgpetPRVepeEpkrrgll
++ +AD vtvHav G ++++++ + +++ t+R g+l
T07C4.1 344 IANWADVVTVHAVQGSDSIAGVFRKLAKDP-----TYR-------LSGVL 381
lvaelsskgsldlqeelaggrtytqelvhraadlaaeanidkagdgdagv
l+a+ls+kgsl++ e g yt+ +v++a+++ + +
T07C4.1 382 LIAQLSTKGSLTALE---G---YTETAVKIANENR------------DVI 413
dGvvasatepgegealkevrgrskfpdfllltPGir...ggdaggqqrvt
G++ + + +++d+l +tPG++ + ++d +gqq+++
T07C4.1 414 SGFITQTRVS-------------ACSDLLNWTPGVNldaKSDSAGQQWRG 450
tpavakeaGadiiiVGRgItgAardPveaarki<-*
++++++ diiiVGRg+t ++ +Pv+ ++++
T07C4.1 451 VDEAIEVQQNDIIIVGRGVTSSS-EPVQQLKRY 482