Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T07C4.9
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Query: T07C4.9 CE23956 locus:nex-2 Annexin status:Confirmed TR:Q27512 protein_id:CAA82571.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
annexin Annexin 430.0 2.1e-125 4
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 9.1 0.036 1
RNA_pol_Rpb2_1 RNA polymerase beta subunit 2.8 1.9 1
DAD DAD family 2.7 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
annexin 1/4 193 260 .. 1 68 [] 114.2 2.5e-30
RNA_pol_Rpb2_1 1/1 6 297 .. 158 238 .] 2.8 1.9
RNA_pol_Rpb1_5 1/1 1 300 [. 89 210 .] 9.1 0.036
annexin 2/4 265 332 .. 1 68 [] 127.1 3.2e-34
DAD 1/1 374 399 .. 1 33 [. 2.7 5.9
annexin 3/4 348 416 .. 1 68 [] 98.7 1.1e-25
annexin 4/4 424 491 .. 1 68 [] 99.8 5.3e-26
Alignments of top-scoring domains:
annexin: domain 1 of 4, from 193 to 260: score 114.2, E = 2.5e-30
*->payDAelLrkAmkGlGTDEdtlIrILatRsnaqlqaIkeaYkklygk
DAe+LrkAmkGlG++++ +I IL++R+n q+q+I +a+k +ygk
T07C4.9 193 SNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKVMYGK 239
dLekdiksetSGdfeklLlaL<-*
dL+k +k+e+ Gdfe+l+laL
T07C4.9 240 DLIKELKGELHGDFEDLILAL 260
RNA_pol_Rpb2_1: domain 1 of 1, from 6 to 297: score 2.8, E = 1.9
RF xxxxxxxxxxxxxxxx
*->FivnGsekviiaqivr...............................
F++ G++ v+ ++ ++++++++++++++++++++ +++++ +++
T07C4.9 6 FVMSGIQDVLDNKLGGlggnnkqqqpssqqssqepsnmnsgggypnq 52
RF
..................................................
+++ ++ ++++++++ ++++ ++ +++++++ ++++++++ +++++++++
T07C4.9 53 qpsyggygqppqqpgygngsydpygqpqqqpypggggqppypgsnsnqgg 102
RF
..................................................
++ +++++ + ++++++ ++ ++ + ++++++ +++++++ ++++++ ++
T07C4.9 103 ggypgqggapypggsggypqapqygfsggqgsapqpnqggyppqqqqypp 152
RF
..................................................
+++ +++++++++++ ++++ +++ ++++ + ++ +++ + + ++
T07C4.9 153 qqgyqqggqqqggggffpnqgygqpvmigtpsvfpvqgfnsnadaevlrk 202
RF xxxxxxxxxxxxxxx xxxxx
.............................lageLlqslfrvllk.klekd
++ + ++++ + ++++ ++++ +++ ++ + + lk++l d
T07C4.9 203 amkglgcnnskvisilcqrtnwqrqeiskAFKVMYGKDLIKELKgELHGD 252
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
vreklqkllkkkskkkelnlqrllkalvksaktitsglkeflatg<-*
+++ + +l++ + + ++l+r ++ l ++ +++++ +++ + +
T07C4.9 253 FEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTSRTNAQ 297
RNA_pol_Rpb1_5: domain 1 of 1, from 1 to 300: score 9.1, E = 0.036
RF xxxxxxxxxx
*->ltlrtfHlag.....................................
+ lr f ++g ++ +++ ++ ++++++++++++++++++++ ++++
T07C4.9 1 MSLRKFVMSGiqdvldnklgglggnnkqqqpssqqssqepsnmnsgg 47
RF
..................................................
+ ++++++ ++ ++++++++ ++++ ++ +++++++ ++++++++ ++++
T07C4.9 48 gypnqqpsyggygqppqqpgygngsydpygqpqqqpypggggqppypgsn 97
RF
..................................................
+++++++ +++++ + ++++++ ++ ++ + ++++++ +++++++ ++++
T07C4.9 98 snqggggypgqggapypggsggypqapqygfsggqgsapqpnqggyppqq 147
RF xxxxxxx
...........................................keeekki
++ +++++ +++++++++++ ++++ +++ ++++ + ++ ++++++
T07C4.9 148 qqyppqqgyqqggqqqggggffpnqgygqpvmigtpsvfpvqgFNSNADA 197
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
eeekkkeavlkvegkelqkvlkelqgvikadktienkvlevlkvlgieaa
e +k+ + l + +++ ++l q+ +++ i++ ++ ++ + i++
T07C4.9 198 EVLRKAMKGLGCNNSKVISILC--QRTNWQRQEISKAFKVMYGKDLIKEL 245
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
resilkeleevlkkegievnerhlalladlmtakgellgitraglkkeee
+ + e+++ + + + ++l++ m g+ ++ + ++++++
T07C4.9 246 KGELHGDFEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTSRTN 295
RF xxxxx
svlsa<-*
+ +++
T07C4.9 296 AQIQQ 300
annexin: domain 2 of 4, from 265 to 332: score 127.1, E = 3.2e-34
*->payDAelLrkAmkGlGTDEdtlIrILatRsnaqlqaIkeaYkklygk
+ yDA++L++Am GlGT E++lI+I+++R+naq+q++++aYk l++k
T07C4.9 265 AIYDAKQLHRAMEGLGTKESVLIEIMTSRTNAQIQQVRDAYKMLFKK 311
dLekdiksetSGdfeklLlaL<-*
dLe d+ +etSG+f++lL++L
T07C4.9 312 DLERDLIGETSGHFKRLLVSL 332
DAD: domain 1 of 1, from 374 to 399: score 2.7, E = 5.9
*->stskvtsvlsrvLtdyqetTstSKRAYFAQiEK<-*
+s+ +s l+ v+ +yq++ + iEK
T07C4.9 374 LASQNFSQLRLVFEEYQKASNH-------SIEK 399
annexin: domain 3 of 4, from 348 to 416: score 98.7, E = 1.1e-25
*->payDAe.lLrkAmkGlGTDEdtlIrILatRsnaqlqaIkeaYkklyg
+ +DA +lL++++k+lGTDE+t++ ILa+ + ql++++e+Y+k ++
T07C4.9 348 ANQDARrLLQAGEKRLGTDESTFNAILASQNFSQLRLVFEEYQKASN 394
kdLekdiksetSGdfeklLlaL<-*
+++ek+i+ e+SGd++++Lla+
T07C4.9 395 HSIEKAIEFEFSGDIRDGLLAV 416
annexin: domain 4 of 4, from 424 to 491: score 99.8, E = 5.3e-26
*->payDAelLrkAmkGlGTDEdtlIrILatRsnaqlqaIkeaYkklygk
pay+A+lL+++mkGlGT++++lIr +tR+++++ +I++ +++ly
T07C4.9 424 PAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDIRNMFQSLYRT 470
dLekdiksetSGdfeklLlaL<-*
+Le +ik+++SG ++++L aL
T07C4.9 471 SLENMIKGDCSGAYKEGLIAL 491