Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T07C4.1
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Query:  T07C4.1  CE00638   UMP synthase status:Partially_confirmed TR:Q18516 protein_id:CAA84708.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
OMPdecase    Orotidine 5'-phosphate decarboxylase / H   221.9    8.1e-63   1
Pribosyltran Phosphoribosyl transferase domain          114.0    5.4e-32   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Pribosyltran   1/1      41   184 ..     1   174 []   114.0  5.4e-32
OMPdecase      1/1     264   482 ..     1   277 []   221.9  8.1e-63

Alignments of top-scoring domains:
Pribosyltran: domain 1 of 1, from 41 to 184: score 114.0, E = 5.4e-32
                   *->pyffditkllippellraiarelaeiikeeg.kpdvvvGpdagGipf
                      p+++d+++ + +p ll +i++++ ++++ ++ ++  v+G++++++p
     T07C4.1    41    PIYIDLRECFGHPGLLMLISEAISKQVEISEvQYAGVLGIPYAALPY 87

                   aaalAdaLgvpfvpvrKEnsagklplalirkrsyakeygtgeqesevgli
                   a+  A                 k+pl li +r++ak ygt+      +li
     T07C4.1    88 ASVAAGNYL-------------KKPL-LI-VRKEAKSYGTK------KLI 116

                   egvgdvggdierpGkrVliVDDvidTGgTilaaaelLkeagpGakvvgva
                   eg++++++       r ++++Dv++TGg+il +++ L+ +  + +  +v+
     T07C4.1   117 EGLYQPND-------RLILIEDVVTTGGSILDVVKVLHTE--NLVASDVF 157

                   vlvdrpeggarerlekegfpveslivld<-*
                   +++dr e+g+r++l+++g++++sl++++
     T07C4.1   158 CILDR-EQGGRQKLQDAGVTLHSLLDMQ    184

OMPdecase: domain 1 of 1, from 264 to 482: score 221.9, E = 8.1e-63
                   *->pnLcvALDvptklawlddagleealieladelgpeyvdvlKvGtplf
                      +nLc+A D++t          e++l ++++ +gp  v+++K + + +
     T07C4.1   264    SNLCLAVDYTTV---------EQCL-QMIELAGP-FVLAIKLHADAI 299

                   edfGseGttllklvaelkkhgpdfliflDlKfaDIGnTvakqaesGvgak
                   +df  e  +++kl   + +++  f+if+D+Kf+D+GnT+ +q   G+ +k
     T07C4.1   300 TDFNEE--FTRKLTTMANDMD--FIIFEDRKFGDTGNTNLLQL-TGA-QK 343

                   aklgADivtvHavaGdgtlkaakeaaeelgkrgpetPRVepeEpkrrgll
                   ++ +AD vtvHav G ++++++ + +++       t+R         g+l
     T07C4.1   344 IANWADVVTVHAVQGSDSIAGVFRKLAKDP-----TYR-------LSGVL 381

                   lvaelsskgsldlqeelaggrtytqelvhraadlaaeanidkagdgdagv
                   l+a+ls+kgsl++ e   g   yt+ +v++a+++             + +
     T07C4.1   382 LIAQLSTKGSLTALE---G---YTETAVKIANENR------------DVI 413

                   dGvvasatepgegealkevrgrskfpdfllltPGir...ggdaggqqrvt
                    G++ + +               +++d+l +tPG++ + ++d +gqq+++
     T07C4.1   414 SGFITQTRVS-------------ACSDLLNWTPGVNldaKSDSAGQQWRG 450

                   tpavakeaGadiiiVGRgItgAardPveaarki<-*
                   ++++++    diiiVGRg+t ++ +Pv+ ++++
     T07C4.1   451 VDEAIEVQQNDIIIVGRGVTSSS-EPVQQLKRY    482



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