hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T07C4.5
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Query:  T07C4.5  CE03639   Transthyretin-like family status:Confirmed SW:Q22288 protein_id:CAA82574.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF290   Transthyretin-like family                      143.4    6.9e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF290     1/1      20   121 ..     1   111 [.   143.4  6.9e-40

Alignments of top-scoring domains:
DUF290: domain 1 of 1, from 20 to 121: score 143.4, E = 6.9e-40
                   *->rdQsvaVkGrLiCggkPaanvkVkLydkdtGpelgiidpDdLLdetk
                      ++Q+++VkG  iC++k  ++++V+L++kdt      +dpDd+L++++
     T07C4.5    20    KKQTITVKGTTICNKK-RIQAEVTLWEKDT------LDPDDKLASMQ 59

                   TdenGeFqLsGsttEittINPDPkLnIyHdCndggkepCqRklkitIPke
                   ++++GeF+L+Gs++Eit+I  +P+L+I H+Cn ++++ C+R+++++IPke
     T07C4.5    60 SNKEGEFSLTGSDDEITSI--SPYLIITHNCNVKKAG-CKRVSEYLIPKE 106

                   yitsGk.tpkktFDI<-*
                    i  ++++++ t DI
     T07C4.5   107 KIGGTYdMTYVTLDI    121

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