Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T07C5.1c
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T07C5.1c CE31603 status:Partially_confirmed TN:CAD44148 protein_id:CAD44148.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UDPGT UDP-glucoronosyl and UDP-glucosyl tra 102.5 7.5e-28 2
Glyco_tran_28_C Glycosyltransferase family 28 C-termi 8.6 0.2 1
Nairo_nucleocap Nucleocapsid N protein 7.0 0.057 1
SBP_bac_7 Bacterial extracellular solute-bindin 3.8 4.5 1
Nuf2 Nuf2 family 3.6 7.2 1
Spermine_synth Spermine/spermidine synthase 2.3 6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Spermine_synth 1/1 139 162 .. 232 259 .. 2.3 6
Nairo_nucleocap 1/1 150 166 .. 428 444 .] 7.0 0.057
SBP_bac_7 1/1 191 218 .. 271 298 .] 3.8 4.5
UDPGT 1/2 26 309 .. 1 291 [. 13.6 0.0049
Glyco_tran_28_C 1/1 377 421 .. 86 134 .. 8.6 0.2
UDPGT 2/2 358 472 .. 333 447 .. 91.2 1.1e-24
Nuf2 1/1 462 478 .. 145 161 .] 3.6 7.2
Alignments of top-scoring domains:
Spermine_synth: domain 1 of 1, from 139 to 162: score 2.3, E = 6
*->kFDvIIvDstDvPvGpaearDTsLFske<-*
kFD +I+ ++D P +pa r LF ++
T07C5.1c 139 KFDLVIYNEID-PCTPAIVR---LFNIP 162
Nairo_nucleocap: domain 1 of 1, from 150 to 166: score 7.0, E = 0.057
*->PCAstIvkLfeiqkiGy<-*
PC Iv+Lf i+k+ +
T07C5.1c 150 PCTPAIVRLFNIPKTVL 166
SBP_bac_7: domain 1 of 1, from 191 to 218: score 3.8, E = 4.5
*->evivltpedreafrealkpvykefekei<-*
+v++ + dr+ f e + vyk+f++ +
T07C5.1c 191 SVEENPNHDRMSFFERMSNVYKFFQSIV 218
UDPGT: domain 1 of 2, from 26 to 309: score 13.6, E = 0.0049
*->gkvLvwP..mdfShWlnmkgileeLvqrGhevvvLrpsasilikpkk
+k+Lv +++ Sh l ++ + L+ Gh+ v ps s l++ +
T07C5.1c 26 AKILVYCpsISKSHVLLCSKYADLLHNAGHDTVLFIPSYSKLLD--N 70
esnlkfetypvsltkeelensflklvkklfeeaselktvwsyfsalqkli
++ k + +e + l + +++e+ + +++ +
T07C5.1c 71 YDGAKHAKVWRLHNVTEAYDTKLGTLANVMENSHI--GFIDRLTFDA--- 115
seysdlaessCkevvsnkklmtklqeSsfDvvlaDpvlpcgellAellki
d+ ++C+++++ m+++ +fD v ++pc + l++i
T07C5.1c 116 ----DFWIDMCADLLGKLPEMQHIIDYKFDLVIYNEIDPCTPAIVRLFNI 161
Ptvysl..rfvpgyalekasGgllaPpSYvPvilse.lsDqmtFieRVkN
P ++l+++++ ++++ + l+ pSYvP + + D+m F eR N
T07C5.1c 162 PKTVLLssEAIMDKVAWNLG--LPTLPSYVPSVEENpNHDRMSFFERMSN 209
...mlimLyfdflfqrfkkkkwdqfaSevlgrpvtlvellskAsvwLlRs
++ ++ +++l ++ + f ev +++e++ +s L +
T07C5.1c 210 vykFFQSIVVHYLQDIHVLN---LFRKEVSSDFPSIAEIIRNVSLVLVNT 256
ywdlefPrPllPNvefiGGlnckpakP..LpkemEefvqsSGEhGvVVFS
+ ++ Pr ++++G l + + + +Lpk ++ + G G V +S
T07C5.1c 257 DEIFDLPRSYSSKFVYVGMLEAGKDENvtLPKKQDDYFKK-GKSGSVFVS 305
LGSm<-*
+G++
T07C5.1c 306 FGTV 309
Glyco_tran_28_C: domain 1 of 1, from 377 to 421: score 8.6, E = 0.2
*->IsRAGAgTiaEllalGkPaIlVPnpkaageHqdnNAlelvkagaaev
+s++G ++++E++++G+P+++ P + +q N + +++ ga+++
T07C5.1c 377 VSHGGMNSVLETMYYGVPMVIMPVFT----DQFRNGRNVERRGAGKM 419
ll<-*
+l
T07C5.1c 420 VL 421
UDPGT: domain 2 of 2, from 358 to 472: score 91.2, E = 1.1e-24
*->lvkWlPQnDLLGHPktkAFiTHaGanGvyEaIyhGvPMvgiPLFGDQ
lv+W+PQ ++L+H+ k F+ H+G n+v+E y GvPMv +P F DQ
T07C5.1c 358 LVDWVPQKAVLRHANLKLFVSHGGMNSVLETMYYGVPMVIMPVFTDQ 404
mDNakrmeakGAavtlnvleMtsedLlnALktVindksYKeNiMrLSsiH
N + +e +GA+ + ++ +e + A+ +V+++ksY + r S +
T07C5.1c 405 FRNGRNVERRGAGKMVLRETVVKETFFDAIHSVLEEKSYSSSVKRISHLM 454
kDqPvkPLDrAVFWiEFV<-*
k +P r Wi FV
T07C5.1c 455 KNKPFTSEERVTKWIDFV 472
Nuf2: domain 1 of 1, from 462 to 478: score 3.6, E = 7.2
*->EerleqcdeFilqreSl<-*
Eer ++ +F+l++e +
T07C5.1c 462 EERVTKWIDFVLKYETS 478