Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T07C5.1c
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Query:  T07C5.1c  CE31603    status:Partially_confirmed TN:CAD44148 protein_id:CAD44148.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
UDPGT           UDP-glucoronosyl and UDP-glucosyl tra   102.5    7.5e-28   2
Glyco_tran_28_C Glycosyltransferase family 28 C-termi     8.6        0.2   1
Nairo_nucleocap Nucleocapsid N protein                    7.0      0.057   1
SBP_bac_7       Bacterial extracellular solute-bindin     3.8        4.5   1
Nuf2            Nuf2 family                               3.6        7.2   1
Spermine_synth  Spermine/spermidine synthase              2.3          6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Spermine_synth    1/1     139   162 ..   232   259 ..     2.3        6
Nairo_nucleocap   1/1     150   166 ..   428   444 .]     7.0    0.057
SBP_bac_7         1/1     191   218 ..   271   298 .]     3.8      4.5
UDPGT             1/2      26   309 ..     1   291 [.    13.6   0.0049
Glyco_tran_28_C   1/1     377   421 ..    86   134 ..     8.6      0.2
UDPGT             2/2     358   472 ..   333   447 ..    91.2  1.1e-24
Nuf2              1/1     462   478 ..   145   161 .]     3.6      7.2

Alignments of top-scoring domains:
Spermine_synth: domain 1 of 1, from 139 to 162: score 2.3, E = 6
                   *->kFDvIIvDstDvPvGpaearDTsLFske<-*
                      kFD +I+ ++D P +pa  r   LF ++
    T07C5.1c   139    KFDLVIYNEID-PCTPAIVR---LFNIP    162

Nairo_nucleocap: domain 1 of 1, from 150 to 166: score 7.0, E = 0.057
                   *->PCAstIvkLfeiqkiGy<-*
                      PC   Iv+Lf i+k+ +
    T07C5.1c   150    PCTPAIVRLFNIPKTVL    166

SBP_bac_7: domain 1 of 1, from 191 to 218: score 3.8, E = 4.5
                   *->evivltpedreafrealkpvykefekei<-*
                      +v++  + dr+ f e +  vyk+f++ +
    T07C5.1c   191    SVEENPNHDRMSFFERMSNVYKFFQSIV    218

UDPGT: domain 1 of 2, from 26 to 309: score 13.6, E = 0.0049
                   *->gkvLvwP..mdfShWlnmkgileeLvqrGhevvvLrpsasilikpkk
                      +k+Lv  +++  Sh l  ++  + L+  Gh+ v   ps s l++  +
    T07C5.1c    26    AKILVYCpsISKSHVLLCSKYADLLHNAGHDTVLFIPSYSKLLD--N 70

                   esnlkfetypvsltkeelensflklvkklfeeaselktvwsyfsalqkli
                   ++  k   +      +e  +  l  + +++e+ +   +++  +
    T07C5.1c    71 YDGAKHAKVWRLHNVTEAYDTKLGTLANVMENSHI--GFIDRLTFDA--- 115

                   seysdlaessCkevvsnkklmtklqeSsfDvvlaDpvlpcgellAellki
                       d+  ++C+++++    m+++   +fD v    ++pc   +  l++i
    T07C5.1c   116 ----DFWIDMCADLLGKLPEMQHIIDYKFDLVIYNEIDPCTPAIVRLFNI 161

                   Ptvysl..rfvpgyalekasGgllaPpSYvPvilse.lsDqmtFieRVkN
                   P  ++l+++++ ++++   +  l+  pSYvP +   +  D+m F eR  N
    T07C5.1c   162 PKTVLLssEAIMDKVAWNLG--LPTLPSYVPSVEENpNHDRMSFFERMSN 209

                   ...mlimLyfdflfqrfkkkkwdqfaSevlgrpvtlvellskAsvwLlRs
                     ++ ++  +++l ++   +    f  ev     +++e++  +s  L  +
    T07C5.1c   210 vykFFQSIVVHYLQDIHVLN---LFRKEVSSDFPSIAEIIRNVSLVLVNT 256

                   ywdlefPrPllPNvefiGGlnckpakP..LpkemEefvqsSGEhGvVVFS
                   +  ++ Pr     ++++G l + + +  +Lpk   ++ +  G  G V +S
    T07C5.1c   257 DEIFDLPRSYSSKFVYVGMLEAGKDENvtLPKKQDDYFKK-GKSGSVFVS 305

                   LGSm<-*
                   +G++
    T07C5.1c   306 FGTV    309

Glyco_tran_28_C: domain 1 of 1, from 377 to 421: score 8.6, E = 0.2
                   *->IsRAGAgTiaEllalGkPaIlVPnpkaageHqdnNAlelvkagaaev
                      +s++G ++++E++++G+P+++ P  +    +q  N + +++ ga+++
    T07C5.1c   377    VSHGGMNSVLETMYYGVPMVIMPVFT----DQFRNGRNVERRGAGKM 419

                   ll<-*
                   +l
    T07C5.1c   420 VL    421

UDPGT: domain 2 of 2, from 358 to 472: score 91.2, E = 1.1e-24
                   *->lvkWlPQnDLLGHPktkAFiTHaGanGvyEaIyhGvPMvgiPLFGDQ
                      lv+W+PQ ++L+H+  k F+ H+G n+v+E  y GvPMv +P F DQ
    T07C5.1c   358    LVDWVPQKAVLRHANLKLFVSHGGMNSVLETMYYGVPMVIMPVFTDQ 404

                   mDNakrmeakGAavtlnvleMtsedLlnALktVindksYKeNiMrLSsiH
                     N + +e +GA+  +  ++  +e +  A+ +V+++ksY   + r S +
    T07C5.1c   405 FRNGRNVERRGAGKMVLRETVVKETFFDAIHSVLEEKSYSSSVKRISHLM 454

                   kDqPvkPLDrAVFWiEFV<-*
                   k +P     r   Wi FV
    T07C5.1c   455 KNKPFTSEERVTKWIDFV    472

Nuf2: domain 1 of 1, from 462 to 478: score 3.6, E = 7.2
                   *->EerleqcdeFilqreSl<-*
                      Eer  ++ +F+l++e +
    T07C5.1c   462    EERVTKWIDFVLKYETS    478



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