Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T07F10.1
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Query: T07F10.1 CE21162 aminopeptidase N status:Partially_confirmed TR:Q22317 protein_id:CAB01242.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M1 Peptidase family M1 671.0 9.2e-232 1
Zip ZIP Zinc transporter 5.9 1.6 1
VPS9 Vacuolar sorting protein 9 (VPS9) domain 5.5 5.2 1
DUF605 Protein of unknown function, DUF605 3.1 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Zip 1/1 15 48 .. 331 363 .] 5.9 1.6
Peptidase_M1 1/1 86 486 .. 1 436 [] 671.0 9.2e-232
VPS9 1/1 650 674 .. 1 26 [. 5.5 5.2
DUF605 1/1 888 915 .. 1 31 [. 3.1 6.6
Alignments of top-scoring domains:
Zip: domain 1 of 1, from 15 to 48: score 5.9, E = 1.6
*->ssksn.ssgqsdlklsllqllalllGfalMllia<-*
+++++++++ + +k + l +++ llG+++ ++i+
T07F10.1 15 HPPPKeTKKGCQVKSFVLPVFCTLLGVLITAFIT 48
Peptidase_M1: domain 1 of 1, from 86 to 486: score 671.0, E = 9.2e-232
*->LPttvkPlhYdLtlkpkfgnlpekpn.....nftFsGsvtItltnqa
LPt+v+P++Y+Lt+k+ +lp+++++ +++n+tF+G+v I+l ++
T07F10.1 86 LPTSVSPISYQLTVKT---YLPGYGYtadknNLTFEGQVLIEL--NI 127
tkaatdeIvLhakdltisstgegvrvtlvlvngsqklpesvefslqsetd
t ++++ ++L++kdl++++ e+++++ +lvng +s+ f+l++++
T07F10.1 128 T-KSIKKVSLNSKDLNYTE--EFIKKSSILVNG-----KSIAFTLDDKQ- 168
flavddnkekltinlpealsagqggpytLkIeyegklndismlGfYrseY
++ek+ +nl+e+++ + + tLk+ + ++l++ +m G+Y+++Y
T07F10.1 169 -----STHEKIFFNLDETVEPTTS--ATLKVAFGAPLRT-DMSGLYQTTY 210
tdgkdgetkymatTQfeeptdARraFPCfDEPafKATFtitiihpkgtta
t++ +ge k++a+TQ+e p++ARr++PCfDEPa+KAT+t+t+ihp++t+a
T07F10.1 211 TNS-KGESKMAAVTQME-PVYARRMVPCFDEPAYKATWTVTVIHPNKTVA 258
lSNmpvisttkdddgptrvittFetTpkMStYLlAfiVGeleyietetkd
+SN+ + + + g + i+tF+ Tp+MS+YLlA++++e+ey e++tk+
T07F10.1 259 VSNGIEDKVEDGQPG--FIISTFKPTPRMSSYLLAIFISEFEYNEATTKS 306
gysarevpvrvyarpgaknagqgqyalevtkkllefyedyfgipYplpKl
g v++rv++rp++kn +++ya e ++k+le+ye+y++i++plpK+
T07F10.1 307 G-----VRFRVWSRPEEKN--STMYAVEAGVKCLEYYEKYYNISFPLPKQ 349
DqvAvPdFsaGAMENWGLiTyrepaLLydprsssnsdkqrVaeviaHELA
D+vA+PdFsaGAMENWGLiTyre aLLydpr +s s+k rVa viaHELA
T07F10.1 350 DMVALPDFSAGAMENWGLITYRESALLYDPRIYSGSQKRRVAVVIAHELA 399
HQWFGNLVTmkWWddLWLNEGFAtymEylgtdelggepewnieaqfvlrd
HQWFGNLVT+kWW+dLWLNEGFAt +Eylgtde+ ++ +++++++f++ d
T07F10.1 400 HQWFGNLVTLKWWNDLWLNEGFATLVEYLGTDEI-SDGNMRMREWFTM-D 447
dvaqlalasDslgsshPitnklvevntpaeiseiFdsaitYaKG<-*
++ ++ala+Ds++s+hP+t +++++++e+ + Fd ++tY+KG
T07F10.1 448 AL-WSALAADSVASTHPLT---FKIDKAMEVLDSFD-SVTYDKG 486
VPS9: domain 1 of 1, from 650 to 674: score 5.5, E = 5.2
*->fleeakqeLrelqYeyysPrdKlqcl<-*
++e+++ L+e+ e++sP+ ++++
T07F10.1 650 LWKEISEMLKENH-EQFSPQTRVRLI 674
DUF605: domain 1 of 1, from 888 to 915: score 3.1, E = 6.6
*->mKiPrskeTkearkfLmgLldqLEalKkQLa<-*
Ki s+ + ++ + L L+d E + k+La
T07F10.1 888 -KI--SSNDATTDAMLNFLIDRWEDMQKRLA 915