Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T08A9.9
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Query: T08A9.9 CE04924 locus:spp-5 status:Partially_confirmed TR:Q22339 protein_id:AAA81417.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SapB_2 Saposin-like type B, region 2 38.5 9.2e-10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SapB_2 1/1 188 222 .. 1 35 [] 38.5 9.2e-10
Alignments of top-scoring domains:
SapB_2: domain 1 of 1, from 188 to 222: score 38.5, E = 9.2e-10
*->sdqCkefVdqYgpliidlLesgldPkevCsklglC<-*
+ +C+++V+ ++ ii+ Le g+ Pk+vC+kl+ C
T08A9.9 188 TRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNEC 222