Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T08A9.9
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Query:  T08A9.9  CE04924  locus:spp-5  status:Partially_confirmed TR:Q22339 protein_id:AAA81417.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
SapB_2   Saposin-like type B, region 2                   38.5    9.2e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SapB_2     1/1     188   222 ..     1    35 []    38.5  9.2e-10

Alignments of top-scoring domains:
SapB_2: domain 1 of 1, from 188 to 222: score 38.5, E = 9.2e-10
                   *->sdqCkefVdqYgpliidlLesgldPkevCsklglC<-*
                      + +C+++V+  ++ ii+ Le g+ Pk+vC+kl+ C
     T08A9.9   188    TRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNEC    222



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