Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T08A9.7
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Query: T08A9.7 CE31233 locus:spp-3 status:Confirmed TR:Q22336 protein_id:AAM69087.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SapB_2 Saposin-like type B, region 2 48.9 7.2e-13 1
SapB_1 Saposin-like type B, region 1 15.2 0.0046 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SapB_1 1/1 23 57 .. 1 37 [. 15.2 0.0046
SapB_2 1/1 66 100 .] 1 35 [] 48.9 7.2e-13
Alignments of top-scoring domains:
SapB_1: domain 1 of 1, from 23 to 57: score 15.2, E = 0.0046
*->dilCelCemvVkevenlLkdnkTqeeIlkaLeklCdl<-*
+i Ce C+m Vk v +L e I+ka++ C++
T08A9.7 23 GIECEMCKMSVKIVVPMLGED--TESIKKAVDAECKK 57
SapB_2: domain 1 of 1, from 66 to 100: score 48.9, E = 7.2e-13
*->sdqCkefVdqYgpliidlLesgldPkevCsklglC<-*
+++Ck+f+d+ ++ ii+ Le+g+ P +vC+klg+C
T08A9.7 66 TQECKKFIDTKLDPIIHELENGTAPSDVCTKLGMC 100