Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T08G11.5
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Query: T08G11.5 CE13451 locus:unc-29 acetylcholine receptor, beta precursor status:Confirmed SW:P48181 protein_id:CAB02308.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Neur_chan_LBD Neurotransmitter-gated ion-channel lig 297.4 1.8e-85 1
Neur_chan_memb Neurotransmitter-gated ion-channel tra 214.6 2e-62 1
ATP-synt_B ATP synthase B/B' CF(0) 5.7 2.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Neur_chan_LBD 1/1 30 230 .. 1 246 [] 297.4 1.8e-85
ATP-synt_B 1/1 300 322 .. 1 23 [. 5.7 2.3
Neur_chan_memb 1/1 237 463 .. 1 291 [] 214.6 2e-62
Alignments of top-scoring domains:
Neur_chan_LBD: domain 1 of 1, from 30 to 230: score 297.4, E = 1.8e-85
*->etrLlddLlentvsgYdkrvRPv.nggdvPpvtVsvgltlqqiisVd
e+rL+ d +++ Y++++ Pv+n +++P ++V++ l+l +i+Vd
T08G11.5 30 EERLMVDVFRG----YNSLIQPVrNSSELP-LIVKMALQLVLLINVD 71
EknqdlttnvwlrqgqWtDpRLaWnpsdplddeddyggikslrlpsddeh
Ek+q++ tnvwl++ qW+D +Wnp + yg ik++r+++d
T08G11.5 72 EKDQVMHTNVWLTL-QWHDFQMKWNPVN-------YGEIKQIRVSPD--- 110
dmldkIWlPDiflyNqttskadgnhdvttpntnvrvypglkdGtVlwspp
k+WlPDi+l+N +adgn++v+ +++nv++++ G++lw+pp
T08G11.5 111 ----KVWLPDIVLFN----NADGNYEVS-FMCNVVINH---KGDMLWVPP 148
aiykssCpmdltyFPFDqQnCslkFgSwtYngdevdlqwkddleeidLpd
aiykssC +d+++FPFD+Q C+l+FgSwtYn++e++l++ + e +d ++
T08G11.5 149 AIYKSSCIIDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQA-ELVDVSE 197
FtengeWdlldvpakrnekpygcyselsgagLnklvYpditfyfvlrRkp
+ +++Wd++dvpa + k ++ i f++ +rRk+
T08G11.5 198 YSASSIWDVIDVPASLVNK-----------------RSRIEFQVRIRRKT 230
<-*
T08G11.5 - -
ATP-synt_B: domain 1 of 1, from 300 to 322: score 5.7, E = 2.3
*->tLetnlInfliLvglLiyfgykp<-*
t+++n+I +l+ v+++++++++p
T08G11.5 300 TFVLNVITILVTVIIINVYFRGP 322
Neur_chan_memb: domain 1 of 1, from 237 to 463: score 214.6, E = 2e-62
*->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
liiP vL+ fLs vF+LP D+G eK+tL IsvLL+ vFlll+++i
T08G11.5 237 LIIPTVLMAFLSMAVFFLPTDSG-EKITLTISVLLSIVVFLLLVSKI 282
lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmpewv
lP+TS +PL kYll t ++ + i ++v+++nv +R+P +tH+mp+wv
T08G11.5 283 LPPTSSTIPLMAKYLLLTFVLNVITILVTVIIINVYFRGP-RTHRMPQWV 331
rklfLerklPrllfmkrpneslsepnvkrpllrrp.gssssgsslkaeey
r +fL ++lP+l +mkrp+ + ++++v ++ + + ++ g + + +
T08G11.5 332 RVVFL-QFLPKLVCMKRPKSASERSAV----RSGMaQLPGVGQFTLSPSA 376
slskvrselmfekpspeleeylcalhfqgardgldssgtakggrgkthpC
+++ ++s + +++s+ t+
T08G11.5 377 HHPLCPSADDR----------------TTTIRNTASNETS---------- 400
kcckskggpvlesgrslsplslkrlspelkkavegvsrrfIaehkppkea
++ls + +a++++ +I eh
T08G11.5 401 --------------------AYYPLSTDALRAIDAI--EYITEH------ 422
vkawlrskdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-*
l+++ ++s ++dWkyvam IDRl l++F+ +v GT g++
T08G11.5 423 ----LKRDEQHKSFRDDWKYVAMIIDRLLLYVFFGITVGGTCGIL 463