Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T09A5.2
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Query: T09A5.2 CE01083 locus:klp-3 kinesin like protein status:Partially_confirmed SW:P45962 protein_id:CAA85331.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
kinesin Kinesin motor domain 443.8 1.5e-129 1
ldh_C lactate/malate dehydrogenase, alpha/beta C-t 5.9 2.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ldh_C 1/1 171 192 .. 160 181 .] 5.9 2.3
kinesin 1/1 288 566 .. 1 373 [] 443.8 1.5e-129
Alignments of top-scoring domains:
ldh_C: domain 1 of 1, from 171 to 192: score 5.9, E = 2.3
*->reklekSadtLkkiiekgfafv<-*
++kl+++a++Lk ++++++ +
T09A5.2 171 WKKLQRCAEELKTEKDELKRLA 192
kinesin: domain 1 of 1, from 288 to 566: score 443.8, E = 1.5e-129
*->ktFtFDkVFdpestqefvyeetakPlvesvleGyNgtiFAYGQTGSG
++ DkV + + +q+++++e+ +P++ s+++GyN++iFAYG+TGSG
T09A5.2 288 TSAGADKVIPTDFSQDQIFNEV-SPIITSCIDGYNVCIFAYGHTGSG 333
KTYTMeGppdsdkegsgnptdsyttpeeepGiiPRaledlFerieerker
KTYTM G p ++pGi++Ra+ +lFe+ +er+ +
T09A5.2 334 KTYTMDG------------------PVTMPGINQRAIMQLFETAKERTGD 365
kgvfPklnwellnsqetligvsfdrglssdlyvndlefsvrvSylEIYNE
++++++v ++EIYNE
T09A5.2 366 -----------------------------------IKYDIKVAMMEIYNE 380
kirDLLspsppqagspsksnekkkkpgvpLrireDpkrGgkmdgvyVeGL
kirDLL++s +++ L ir+ ++++ ++GL
T09A5.2 381 KIRDLLNTS-------------NTN----LAIRQTEEGR-----SSIPGL 408
tevpVssaeevlelLelGnknRtvasTamNerSSRSHaiFtitveqrnrd
+ev+V+saeev e L +G kn +va+T++N +SSRSH i+++ v +n+
T09A5.2 409 EEVSVNSAEEVTETLARGRKNKAVAATEANIESSRSHVIVRVLVSATNLI 458
segskvtgkdnsgeesvrvskLnLVDLAGSERaskTgatGAggrRLkEga
+ +v++LnLVDLAGSER+s+T+ A+g+ LkE++
T09A5.2 459 TKAT-------------TVGRLNLVDLAGSERVSQTN---ATGQLLKEAQ 492
nINkSLsaLGnVInALa....HiPYRDSKLTrLLqDSLGGGaNsKTlMIa
+INkSLs LGnV+ AL+++++HiP+R+++LTr+L DSL G +sKTl+I+
T09A5.2 493 AINKSLSELGNVVLALRqnqkHIPFRNCQLTRILEDSLNG--DSKTLVIV 540
niSPsssrNntnyeETlsTLrFAsRAknIk<-*
+ SP+++ +++E++s+ +FA+++ ++
T09A5.2 541 HLSPDAK----SLNESISSVNFAEKIGQVF 566