hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T09B4.9
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Query:  T09B4.9  CE13473    status:Partially_confirmed SW:O02161 protein_id:AAB53011.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Tim44    Mitochondrial import inner membrane, translo   785.8   6.9e-239   1
V-SNARE  Vesicle transport v-SNARE protein                4.0        7.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
V-SNARE    1/1      97   124 ..     1    33 [.     4.0      7.1
Tim44      1/1      45   415 ..     1   444 []   785.8 6.9e-239

Alignments of top-scoring domains:
V-SNARE: domain 1 of 1, from 97 to 124: score 4.0, E = 7.1
                   *->IeslLeelqelldqMdlevsrelgppslAqras<-*
                      +++++eel +++ +M +e+  +    ++A++++
     T09B4.9    97    VKQKIEELSDHMKKMVHEI-QK----TEAGKKM    124

Tim44: domain 1 of 1, from 45 to 415: score 785.8, E = 6.9e-239
                   *->NiRaEldKNkElqetvKeLkeraeeLeESDalKkAReKqttEKLYkk
                      N+R+E++KNkElqe++++Lk+r++eL+ESDalK+AR+K      +++
     T09B4.9    45    NVRDEMQKNKELQEHQQQLKARMQELNESDALKDARKK------FEI 85

                   veseTvksSsvvkkkLgklgetvWtEAkevaKLGKeeaseSelSSGtRAS
                   ve+eT+ksS+vvk+k+++l++++    k+++    +e++++e+
     T09B4.9    86 VEKETLKSSEVVKQKIEELSDHM----KKMV----HEIQKTEA------- 120

                   qgkkvkeasaetAktFFakksaekvskvfekvgeTkEqDtfFkavsqsis
                    gkk++ea+ae++k+  a+k+ae+v+kv+ekvg+T+    ++k+vs+s++
     T09B4.9   121 -GKKMTEAGAEALKQ--ARKAAEHVEKVAEKVGDTE----VYKHVSTSMK 163

                   dvKdelrygfHKPLDfadkeqrrkpreLrkrteFAkrkfaeervveaFtn
                   +vKde+++       +ad++++++p++L+krt+  ++++++ervvea  n
     T09B4.9   164 TVKDEIDN-------IADVRMYSRPEALTKRTD--GFDLEKERVVEA--N 202

                   eevtgvelVimPhKdSKwykkWEdFkEknqGSPVFKRLSGmSePvvnklq
                   +++t+v+l    hKdSKwy++W++F+E+n+              +++kl+
     T09B4.9   203 DSATDVTL----HKDSKWYSGWKNFSESNT--------------YYHKLL 234

                   elAEDVKNkkYDESdNPiVrksRdlteKvsdVlsGlFSeTEsSeVlteik
                   ++    K +kYDESdN++Vr++R++teK+++V+sG   ++E+SeVltei+
     T09B4.9   235 DW----K-IKYDESDNMAVRMMRGVTEKIGSVFSG---QNEVSEVLTEIH 276

                   kiDPsFskedFlreceeyIiPnVLEAyvkGDlevLKkWCsEapfevlaae
                   kiD++F+k+++lr+ce++IiPn+LEA++++DlevL++WC+E+++++l+++
     T09B4.9   277 KIDANFDKQEWLRFCETKIIPNILEAFIRFDLEVLQSWCHERAYTQLSTV 326

                   ikeykkqGvyfdDsKILDIseVdiasgKmMeqgDIPVLIvtFQtQeIncv
                   +key+k++++++Ds+I+DI++V++a+gKmMeqg  PVLI++FQ+++In++
     T09B4.9   327 VKEYQKMHFSTKDSRIIDINKVEMATGKMMEQG--PVLIISFQVYMINVT 374

                   RdaksGeivEGdpDkIhrvyYaWvlcRVDeteELneDpIyaaWRLlE<-*
                   ++a+ G++vEGdpD+++r++++WvlcR D+ eE+n  p ++aW+LlE
     T09B4.9   375 KNAD-GKVVEGDPDNPKRINHIWVLCR-DV-EEYN--P-ALAWKLLE    415

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