Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T09B4.10
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Query: T09B4.10 CE29991 status:Confirmed TR:Q9BMU2 protein_id:AAB53012.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
U-box U-box domain 155.4 1.1e-52 1
TPR TPR Domain 78.7 1.1e-20 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/3 5 36 .. 1 32 [. 22.9 0.0001
TPR 2/3 38 71 .. 1 34 [] 35.8 2.1e-08
TPR 3/3 72 102 .. 1 31 [. 21.9 0.0002
U-box 1/1 184 258 .. 1 81 [] 155.4 1.1e-52
Alignments of top-scoring domains:
TPR: domain 1 of 3, from 5 to 36: score 22.9, E = 0.0001
*->aeayynlGnaylklgkydeAieayekALeldP<-*
ae ++ G ++ ++yd+A+++y kA++++P
T09B4.10 5 AEQHNTNGKKCYMNKRYDDAVDHYSKAIKVNP 36
TPR: domain 2 of 3, from 38 to 71: score 35.8, E = 2.1e-08
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
++ y n++++y++l++++ +e++++ALel Pn
T09B4.10 38 PKYYQNRAMCYFQLNNLKMTEEDCKRALELSPNE 71
TPR: domain 3 of 3, from 72 to 102: score 21.9, E = 0.0002
*->aeayynlGnaylklgkydeAieayekALeld<-*
++ +y lGn++l+ +ky eAi ++ kAL ++
T09B4.10 72 VKPLYFLGNVFLQSKKYSEAISCLSKALYHN 102
U-box: domain 1 of 1, from 184 to 258: score 155.4, E = 1.1e-52
*->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
++P++++++ItleLMk+PVi+PSG ityDR++I +HL++ ++++
T09B4.10 184 EVPEMLCGKITLELMKEPVIVPSG-ITYDREEIVQHLRR----IGHF 225
DPftGRepLthdeliPNleLKekIdafleekrea<-*
DP+t R+pLt++e+iPN++LKe+I++fl+++ +a
T09B4.10 226 DPVT-RKPLTENEIIPNYALKEVIEKFLDDNPWA 258