Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T10B10.5
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Query: T10B10.5 CE28659 synaptotagmin like status:Partially_confirmed TR:Q22372 protein_id:CAA96677.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
C2 C2 domain 79.3 2e-21 2
oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreduct 3.3 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
oxidored_q4 1/1 16 45 .. 52 82 .] 3.3 9.7
C2 1/2 160 250 .. 1 88 [] 69.8 1.1e-18
C2 2/2 324 367 .. 29 72 .. 10.5 0.14
Alignments of top-scoring domains:
oxidored_q4: domain 1 of 1, from 16 to 45: score 3.3, E = 9.7
*->nsmlgflsaliFlfiLtiGLvYEWrqGaLeW<-*
n +l+ l a++ +++L++++ +++ L+W
T10B10.5 16 N-FLIVLCATVVIVVLFVSFFLVKTKNKLNW 45
C2: domain 1 of 2, from 160 to 250: score 69.8, E = 1.1e-18
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqk....kkTkvi
L+Vt+++A +Lp k+ +++P+ kvsl ++ +k++ +++Tk+
T10B10.5 160 LTVTIVKAVDLPTKR-EDDLPNPFMKVSLEIPDS-KKpnvdHQTKTY 204
kktlNPvWNEtFtFevpppdlqe.tLeitVyDydrfgrddflGevs<-*
++t +P NE+F+F+v+ ++ +Le+ VyDyd f+ d+ +G +
T10B10.5 205 NGTASPLINEDFYFSVTSQQVSIcRLEVMVYDYDQFSVDECVGYCW 250
C2: domain 2 of 2, from 324 to 367: score 10.5, E = 0.14
*->lggdpkd.qkkkTkvikktlNPvWNEtFtFevpppdlqetLeitV<-
l+g++k +kkkT+ +k ++ ++NE +tF++p ++l e + itV
T10B10.5 324 LDGEEKPlKKKKTSLKKAARSVQFNECLTFSIPKHTLCE-VFITV 367
*
T10B10.5 - -